| Selective binding of retrotransposons by ZFP352 facilitates the timely dissolution of totipotency network Z Li, H Xu, J Li, X Xu, J Wang, D Wu, J Zhang, J Liu, Z Xue, G Zhan, ... Nature Communications 14 (1), 3646, 2023 | 3 | 2023 |
| Identification of a regulatory pathway inhibiting adipogenesis via RSPO2 H Dong, W Sun, Y Shen, M Baláz, L Balázová, L Ding, M Löffler, ... Nature metabolism 4 (1), 90-105, 2022 | 39 | 2022 |
| Genome-wide RNA structure changes during human neurogenesis modulate gene regulatory networks J Wang, T Zhang, Z Yu, WT Tan, M Wen, Y Shen, FRP Lambert, RG Huber, ... Molecular Cell 81 (23), 4942-4953. e8, 2021 | 16 | 2021 |
| Genome-wide RNA structure changes during human neurogenesis drive gene regulatory networks J Wang, T Zhang, Z Yu, WT Tan, M Wen, Y Shen, FRP Lambert, RG Huber, ... bioRxiv, 2021.08. 02.454835, 2021 | 2 | 2021 |
| Determination of isoform-specific RNA structure with nanopore long reads JGA Aw, SW Lim, JX Wang, FRP Lambert, WT Tan, Y Shen, Y Zhang, ... Nature biotechnology 39 (3), 336-346, 2021 | 86 | 2021 |
| Determination of isoform-specific RNA structure with nanopore long reads (October, 10.1038/s41587-020-0712-z, 2020) JGA Aw, SW Lim, JX Wang, FRP Lambert, WT Tan, Y Shen, Y Zhang, ... NATURE BIOTECHNOLOGY, 2020 | | 2020 |
| Direct RNA sequencing reveals structural differences between transcript isoforms JG Ashley Aw, SW Lim, JX Wang, Y Shen, P Kaewsapsak, EP Louis Kok, ... bioRxiv, 2020.06. 11.147223, 2020 | 1 | 2020 |
| Gene regulatory network stabilized by pervasive weak repressions: microRNA functions revealed by the May–Wigner theory Y Chen, Y Shen, P Lin, D Tong, Y Zhao, S Allesina, X Shen, CI Wu National science review 6 (6), 1176-1188, 2019 | 32 | 2019 |
| Zscan4c activates endogenous retrovirus MERVL and cleavage embryo genes W Zhang, F Chen, R Chen, D Xie, J Yang, X Zhao, R Guo, Y Zhang, ... Nucleic acids research 47 (16), 8485-8501, 2019 | 84 | 2019 |
| Structure mapping of dengue and Zika viruses reveals functional long-range interactions RG Huber, XN Lim, WC Ng, AYL Sim, HX Poh, Y Shen, SY Lim, ... Nature communications 10 (1), 1408, 2019 | 114 | 2019 |
| Genome-wide identification of natural RNA aptamers in prokaryotes and eukaryotes S Tapsin, M Sun, Y Shen, H Zhang, XN Lim, TT Susanto, SL Yang, ... Nature communications 9 (1), 1289, 2018 | 44 | 2018 |
| Striking a balance: regulation of transposable elements by Zfp281 and Mll2 in mouse embryonic stem cells Q Dai, Y Shen, Y Wang, X Wang, JC Francisco, Z Luo, C Lin Nucleic acids research 45 (21), 12301-12310, 2017 | 18 | 2017 |
| From foodwebs to gene regulatory networks (GRNs)-weak repressions by microRNAs confer system stability Y Chen, Y Shen, S Allesina, CI Wu bioRxiv, 176701, 2017 | 8 | 2017 |
| Mapping RNA-RNA interactions globally using biotinylated psoralen JGA Aw, Y Shen, N Nagarajan, Y Wan JoVE (Journal of Visualized Experiments), e55255, 2017 | 16 | 2017 |
| A permissive chromatin state regulated by ZFP281-AFF3 in controlling the imprinted Meg3 polycistron Y Wang, Y Shen, Q Dai, Q Yang, Y Zhang, X Wang, W Xie, Z Luo, C Lin Nucleic acids research 45 (3), 1177-1185, 2017 | 33 | 2017 |
| Re-engineered RNA-guided FokI-nucleases for improved genome editing in human cells S Havlicek, Y Shen, Y Alpagu, MB Bruntraeger, NBM Zufir, ZY Phuah, ... Molecular Therapy 25 (2), 342-355, 2017 | 34 | 2017 |
| In vivo mapping of eukaryotic RNA interactomes reveals principles of higher-order organization and regulation JGA Aw, Y Shen, A Wilm, M Sun, XN Lim, KL Boon, S Tapsin, YS Chan, ... Molecular cell 62 (4), 603-617, 2016 | 317 | 2016 |
| Suppression of endogenous gene silencing by bidirectional cytoplasmic RNA decay in Arabidopsis X Zhang, Y Zhu, X Liu, X Hong, Y Xu, P Zhu, Y Shen, H Wu, Y Ji, X Wen, ... Science 348 (6230), 120-123, 2015 | 165 | 2015 |
| New MicroRNAs in Drosophila—Birth, Death and Cycles of Adaptive Evolution Y Lyu, Y Shen, H Li, Y Chen, L Guo, Y Zhao, E Hungate, S Shi, CI Wu, ... PLoS genetics 10 (1), e1004096, 2014 | 56 | 2014 |
| The evolution of evolvability in microRNA target sites in vertebrates J Xu, R Zhang, Y Shen, G Liu, X Lu, CI Wu Genome research 23 (11), 1810-1816, 2013 | 68 | 2013 |
