Sam Buckberry

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Ryan ListerUniversity of Western Australia; Harry Perkins Institute of Medical ResearchVerified email at uwa.edu.au
Claire Trelford RobertsMatthew Flinders Professor, Flinders UniversityVerified email at flinders.edu.au
Tina Bianco-MiottoUniversity of Adelaide, Waite Research Institute & Robinson Research InstituteVerified email at adelaide.edu.au
Jose M PoloThe University of Adelaide and Monash UniversityVerified email at adelaide.edu.au
Dulce B Vargas-LandinPhD, University of Western AustraliaVerified email at research.uwa.edu.au
Daniel PoppeResearch Fellow, University of Western AustraliaVerified email at uwa.edu.au
Owen RackhamUniversity of SouthamptonVerified email at soton.ac.uk
Rebecca K SimmonsUniversity of Western AustraliaVerified email at research.uwa.edu.au
Enrico PetrettoA/Prof & Director, Associate Dean of Research Informatics at Duke-NUS Medical School, SingaporeVerified email at duke-nus.edu.sg
Alex de MendozaSenior Lecturer, Queen Mary University of London, School of Biological and Behavioural SciencesVerified email at qmul.ac.uk
John F. OuyangPrincipal Research Scientist, Duke-NUS Medical SchoolVerified email at duke-nus.edu.sg
Jimmy BreenTelethon Kids Institute (Adelaide Office) & Australian National UniversityVerified email at telethonkids.org.au
Alexandra GrubmanMonash University and Australian Regenerative Medicine InstituteVerified email at monash.edu
Catriona McLeanMonash University, Alfred Hospital, MHRI, Melbourne UniversityVerified email at monash.edu
Shalem LeemaqzCollege of Medicine and Public Health, Flinders UniversityVerified email at flinders.edu.au
Fernando J. RosselloMurdoch Children's Research InstituteVerified email at mcri.edu.au
Stephen J. BentNCMI, CSIROVerified email at csiro.au
Gus DekkerProfessor of Obstetrics & Gynaecology, University of AdelaideVerified email at adelaide.edu.au
Amanda HighetSchool of Medicine, University of AdelaideVerified email at adelaide.edu.au
Sara Alaei ShehniMonash university / Peter MacCallum Cancer CenterVerified email at monash.edu

Sam Buckberry

Telethon Kids Institute // ANU

Verified email at telethonkids.org.au - Homepage

Epigenetics Genomics Bioinformatics Research Computing


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A single-cell atlas of entorhinal cortex from individuals with Alzheimer’s disease reveals cell-type-specific gene expression regulation A Grubman, G Chew, JF Ouyang, G Sun, XY Choo, C McLean, ... Nature Neuroscience, 1-11, 2019	740	2019
Transcriptional signature in microglia associated with Aβ plaque phagocytosis A Grubman, XY Choo, G Chew, JF Ouyang, G Sun, NP Croft, FJ Rossello, ... Nature communications 12 (1), 3015, 2021	202	2021
Integrative transcriptome meta-analysis reveals widespread sex-biased gene expression at the human fetal–maternal interface S Buckberry, T Bianco-Miotto, SJ Bent, GA Dekker, CT Roberts Molecular human reproduction 20 (8), 810-819, 2014	173	2014
Reprogramming roadmap reveals route to human induced trophoblast stem cells X Liu, JF Ouyang, FJ Rossello, JP Tan, KC Davidson, DS Valdes, ... Nature 586 (7827), 101-107, 2020	171	2020
Large scale gene expression meta-analysis reveals tissue-specific, sex-biased gene expression in humans BT Mayne, T Bianco-Miotto, S Buckberry, J Breen, V Clifton, C Shoubridge, ... Frontiers in genetics 7, 183, 2016	123	2016
Transient and permanent reconfiguration of chromatin and transcription factor occupancy drive reprogramming AS Knaupp, S Buckberry, J Pflueger, SM Lim, E Ford, MR Larcombe, ... Cell stem cell 21 (6), 834-845. e6, 2017	122	2017
The emergence of the brain non-CpG methylation system in vertebrates A de Mendoza, D Poppe, S Buckberry, J Pflueger, CB Albertin, T Daish, ... Nature ecology & evolution 5 (3), 369-378, 2021	90	2021
Human prefrontal cortex gene regulatory dynamics from gestation to adulthood at single-cell resolution CA Herring, RK Simmons, S Freytag, D Poppe, JJD Moffet, J Pflueger, ... Cell 185 (23), 4428-4447. e28, 2022	83	2022
Hypoxia induced HIF-1/HIF-2 activity alters trophoblast transcriptional regulation and promotes invasion AR Highet, SM Khoda, S Buckberry, S Leemaqz, T Bianco-Miotto, ... European journal of cell biology 94 (12), 589-602, 2015	83	2015
Recent progress towards understanding the role of DNA methylation in human placental development T Bianco-Miotto, BT Mayne, S Buckberry, J Breen, CMR Lopez, ... Reproduction 152 (1), R23-R30, 2016	78	2016
Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability A de Mendoza, TV Nguyen, E Ford, D Poppe, S Buckberry, J Pflueger, ... Genome Biology 23 (1), 163, 2022	64	2022
Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons A de Mendoza, A Bonnet, DB Vargas-Landin, N Ji, H Li, F Yang, L Li, ... Nature communications 9 (1), 1341, 2018	60	2018
Convergent evolution of a vertebrate-like methylome in a marine sponge A de Mendoza, WL Hatleberg, K Pang, S Leininger, O Bogdanovic, ... Nature ecology & evolution 3 (10), 1464-1473, 2019	58	2019
Cell type of origin dictates the route to pluripotency CM Nefzger, FJ Rossello, J Chen, X Liu, AS Knaupp, J Firas, JM Paynter, ... Cell reports 21 (10), 2649-2660, 2017	57	2017
Zinc is a critical regulator of placental morphogenesis and maternal hemodynamics during pregnancy in mice RL Wilson, SY Leemaqz, Z Goh, D McAninch, T Jankovic-Karasoulos, ... Scientific reports 7 (1), 15137, 2017	48	2017
Imprinted and X-linked non-coding RNAs as potential regulators of human placental function S Buckberry, T Bianco-Miotto, CT Roberts epigenetics 9 (1), 81-89, 2014	48	2014
Quantitative Allele-Specific Expression and DNA Methylation Analysis of H19, IGF2 and IGF2R in the Human Placenta across Gestation Reveals H19 Imprinting … S Buckberry, T Bianco-Miotto, S Hiendleder, CT Roberts PLoS One 7 (12), e51210, 2012	44	2012
massiR : a method for predicting the sex of samples in gene expression microarray datasets S Buckberry, SJ Bent, T Bianco-Miotto, CT Roberts Bioinformatics 30 (14), 2084-2085, 2014	35	2014
Placental transcriptome co-expression analysis reveals conserved regulatory programs across gestation S Buckberry, T Bianco-Miotto, SJ Bent, V Clifton, C Shoubridge, ... BMC genomics 18, 1-13, 2017	33	2017
Vitamin D receptor gene ablation in the conceptus has limited effects on placental morphology, function and pregnancy outcome RL Wilson, S Buckberry, F Spronk, JA Laurence, S Leemaqz, S O’Leary, ... PloS one 10 (6), e0131287, 2015	33	2015

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