Christophe Zimmer

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Citations	10106	4812
h-index	48	38
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Florian MuellerStaff scientist, Institut Pasteur, ParisVerified email at pasteur.fr
Nancy GuillenEmeritus Research Director, CNRS, Institut PasteurVerified email at pasteur.fr
Emmanuelle FabreDR, CNRS, Hopital St LouisVerified email at inserm.fr
Xavier DarzacqProfessor of Genetics, Genomics and DevelopmentVerified email at berkeley.edu
Wei OuyangAssistant Professor, Science for Life Laboratory | KTH Royal Institute of Technology, StockholmVerified email at kth.se
Margaret KivelsonDistinguished Professor Emeritus, UCLAVerified email at igpp.ucla.edu
Hervé Marie-NellyUC BerkeleyVerified email at berkeley.edu
Ricardo HenriquesGroup Leader at Instituto Gulbenkian de Ciência and Honorary Professor at UCL (MRC-LMCB)Verified email at igc.gulbenkian.pt
benoit lelandaisInstitut pasteurVerified email at pasteur.fr
Thomas WalterResearcher, Mines ParisTech and Institut CurieVerified email at mines-paristech.fr
Aubin SAMACOITSSertisVerified email at sertiscorp.com
Gadal OlivierUnité de biologie Moléculaire, Cellulaire et du Développement (MCD), CBI - Toulouse UniversityVerified email at ibcg.biotoul.fr
Martial MarboutyInstitut PasteurVerified email at pasteur.fr
Andrey AristovInstitut PasteurVerified email at pasteur.fr
Martin VolwerkSpace Research Institute, Austrian Academy of SciencesVerified email at oeaw.ac.at
Marc LecuitInstitut Pasteur, Inserm, Université Paris Cité, Biology of Infection UnitVerified email at pasteur.fr
Josiane ZerubiaDirectrice de Recherche INRIAVerified email at inria.fr
Laure Blanc-FéraudDR CNRSVerified email at cnrs.fr
Adrien SenecalAlbert Einstein College of Medicine, New York, USAVerified email at einstein.yu.edu
Alexandre DufourImaging Center of Excellence, TotalEnergiesVerified email at totalenergies.com

Christophe Zimmer

Institut Pasteur, Computational Biology Department, Imaging and Modeling Unit

Verified email at pasteur.fr - Homepage

computational biology biophysics advanced imaging deep learning host-pathogen interactions


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Galileo magnetometer measurements: A stronger case for a subsurface ocean at Europa MG Kivelson, KK Khurana, CT Russell, M Volwerk, RJ Walker, C Zimmer Science 289 (5483), 1340-1343, 2000	679	2000
Richardson–Lucy algorithm with total variation regularization for 3D confocal microscope deconvolution N Dey, L Blanc‐Feraud, C Zimmer, P Roux, Z Kam, JC Olivo‐Marin, ... Microscopy research and technique 69 (4), 260-266, 2006	502	2006
SAGA interacting factors confine sub-diffusion of transcribed genes to the nuclear envelope GG Cabal, A Genovesio, S Rodriguez-Navarro, C Zimmer, O Gadal, ... Nature 441 (7094), 770-773, 2006	499	2006
QuickPALM: 3D real-time photoactivation nanoscopy image processing in ImageJ R Henriques, M Lelek, EF Fornasiero, F Valtorta, C Zimmer, MM Mhlanga Nature methods 7 (5), 339-340, 2010	453	2010
Subsurface oceans on Europa and Callisto: Constraints from Galileo magnetometer observations C Zimmer, KK Khurana, MG Kivelson Icarus 147 (2), 329-347, 2000	417	2000
Deep learning massively accelerates super-resolution localization microscopy W Ouyang, A Aristov, M Lelek, X Hao, C Zimmer Nature biotechnology 36 (5), 460, 2018	407	2018
Segmentation and tracking of migrating cells in videomicroscopy with parametric active contours: A tool for cell-based drug testing C Zimmer, E Labruyere, V Meas-Yedid, N Guillén, JC Olivo-Marin IEEE transactions on medical imaging 21 (10), 1212-1221, 2002	391	2002
Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces A Dufour, V Shinin, S Tajbakhsh, N Guillén-Aghion, JC Olivo-Marin, ... IEEE Transactions on Image Processing 14 (9), 1396-1410, 2005	388	2005
FISH-quant: automatic counting of transcripts in 3D FISH images F Mueller, A Senecal, K Tantale, H Marie-Nelly, N Ly, O Collin, E Basyuk, ... Nature methods 10 (4), 277-278, 2013	331	2013
Autoantibodies neutralizing type I IFNs are present in~ 4% of uninfected individuals over 70 years old and account for~ 20% of COVID-19 deaths P Bastard, A Gervais, T Le Voyer, J Rosain, Q Philippot, J Manry, ... Science immunology 6 (62), eabl4340, 2021	276	2021
Entrapment of intracytosolic bacteria by septin cage-like structures S Mostowy, M Bonazzi, MA Hamon, TN Tham, A Mallet, M Lelek, E Gouin, ... Cell host & microbe 8 (5), 433-444, 2010	260	2010
Transcription factors modulate c-Fos transcriptional bursts A Senecal, B Munsky, F Proux, N Ly, FE Braye, C Zimmer, F Mueller, ... Cell reports 8 (1), 75-83, 2014	258	2014
smiFISH and FISH-quant–a flexible single RNA detection approach with super-resolution capability N Tsanov, A Samacoits, R Chouaib, AM Traboulsi, T Gostan, C Weber, ... Nucleic acids research 44 (22), e165-e165, 2016	251	2016
Imaging movement of malaria parasites during transmission by Anopheles mosquitoes F Frischknecht, P Baldacci, B Martin, C Zimmer, S Thiberge, ... Cellular microbiology 6 (7), 687-694, 2004	238	2004
A single-molecule view of transcription reveals convoys of RNA polymerases and multi-scale bursting K Tantale, F Mueller, A Kozulic-Pirher, A Lesne, JM Victor, MC Robert, ... Nature communications 7 (1), 12248, 2016	230	2016
High-resolution statistical mapping reveals gene territories in live yeast AB Berger, GG Cabal, E Fabre, T Duong, H Buc, U Nehrbass, ... Nature Methods 5 (12), 1031-1037, 2008	228	2008
Single-molecule localization microscopy M Lelek, MT Gyparaki, G Beliu, F Schueder, J Griffié, S Manley, ... Nature Reviews Methods Primers 1 (1), 39, 2021	214	2021
Europa and Callisto: Induced or intrinsic fields in a periodically varying plasma environment MG Kivelson, KK Khurana, DJ Stevenson, L Bennett, S Joy, CT Russell, ... Journal of Geophysical Research: Space Physics (1978–2012) 104 (A3), 4609-4625, 1999	205	1999
Coupled parametric active contours C Zimmer, JC Olivo-Marin IEEE transactions on pattern analysis and machine intelligence 27 (11), 1838 …, 2005	204	2005
A predictive computational model of the dynamic 3D interphase yeast nucleus H Wong, H Marie-Nelly, S Herbert, P Carrivain, H Blanc, R Koszul, ... Current Biology 22 (20), 1881-1890, 2012	184	2012

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