|Integration of external signaling pathways with the core transcriptional network in embryonic stem cells|
X Chen, H Xu, P Yuan, F Fang, M Huss, VB Vega, E Wong, YL Orlov, ...
Cell 133 (6), 1106-1117, 2008
|Assessment of CASP7 structure predictions for template free targets|
R Jauch, HC Yeo, PR Kolatkar, ND Clarke
Proteins: Structure, Function, and Bioinformatics 69 (S8), 57-67, 2007
|Mammalian systems biotechnology reveals global cellular adaptations in a recombinant CHO cell line|
FNK Yusufi, M Lakshmanan, YS Ho, BLW Loo, P Ariyaratne, Y Yang, ...
Cell systems 4 (5), 530-542. e6, 2017
|Mechanistic elements and critical factors of cellular reprogramming revealed by stepwise global gene expression analyses|
SJ Park, HC Yeo, NY Kang, H Kim, J Lin, HH Ha, M Vendrell, JS Lee, ...
Stem Cell Research 12 (3), 730-741, 2014
|Enzyme capacity-based genome scale modelling of CHO cells|
HC Yeo, J Hong, M Lakshmanan, DY Lee
Metabolic engineering 60, 138-147, 2020
|Enhanced production of neuroprogenitors, dopaminergic neurons, and identification of target genes by overexpression of sonic hedgehog in human embryonic stem cells|
SM Wu, KS Tan, H Chen, TT Beh, HC Yeo, SKL Ng, S Wei, DY Lee, ...
Stem cells and development 21 (5), 729-741, 2012
|Integrated transcriptome and binding sites analysis implicates E2F in the regulation of self-renewal in human pluripotent stem cells|
HC Yeo, TT Beh, JJL Quek, G Koh, KKK Chan, DY Lee
PLoS One 6 (11), e27231, 2011
|Patterns of cis-element enrichment reveal potential regulatory modules involved in the transcriptional regulation of anoxia response of japonica rice|
B Mohanty, V Herath, E Wijaya, HC Yeo, BG de Los Reyes, DY Lee
Gene 511 (2), 235-242, 2012
|Precursor mass prediction by clustering ionization products in LC-MS-based metabolomics|
TS Lee, YS Ho, HC Yeo, JPY Lin, DY Lee
Metabolomics 9, 1301-1310, 2013
|WEbcoli: an interactive and asynchronous web application for in silico design and analysis of genome-scale E.coli model|
TS Jung, HC Yeo, SG Reddy, WS Cho, DY Lee
Bioinformatics 25 (21), 2850-2852, 2009
|In silico model-based characterization of metabolic response to harsh sparging stress in fed-batch CHO cell cultures|
JK Hong, HC Yeo, M Lakshmanan, S Han, HM Cha, M Han, DY Lee
Journal of biotechnology 308, 10-20, 2020
|Metabolomics and modelling approaches for systems metabolic engineering|
JK Khanijou, H Kulyk, C Bergès, LW Khoo, P Ng, HC Yeo, M Helmy, ...
Metabolic Engineering Communications, e00209, 2022
|An LC–MS-based lipidomics pre-processing framework underpins rapid hypothesis generation towards CHO systems biotechnology|
HC Yeo, S Chen, YS Ho, DY Lee
Metabolomics 14, 1-13, 2018
|Genome-wide transcriptome and binding sites analyses identify early FOX expressions for enhancing cardiomyogenesis efficiency of hESC cultures|
HC Yeo, S Ting, RM Brena, G Koh, A Chen, SQ Toh, YM Lim, SKW Oh, ...
Scientific Reports 6 (1), 31068, 2016
|Combined multivariate statistical and flux balance analyses uncover media bottlenecks to the growth and productivity of Chinese hamster ovary cell cultures|
HC Yeo, SY Park, T Tan, SK Ng, M Lakshmanan, DY Lee
Biotechnology and Bioengineering 119 (7), 1740-1754, 2022
|A genetic algorithm-based approach for pre-processing metabolomics and lipidomics LC–MS data|
HC Yeo, BKS Chung, W Chong, JX Chin, KS Ang, M Lakshmanan, YS Ho, ...
Metabolomics 12, 1-13, 2016
|Inferring transcription factor targets from gene expression changes and predicted promoter occupancy|
ZX Yeo, HC Yeo, JKS Yeo, AL Yeo, Y Li, ND Clarke
Journal of Computational Biology 16 (2), 357-368, 2009
|Machine learning alternative to systems biology should not solely depend on data|
HC Yeo, K Selvarajoo
Briefings in Bioinformatics 23 (6), bbac436, 2022
|Integrative metabolomic analysis reveals diet supplementation with green tea alleviates UVB-damaged mouse skin correlated with ascorbate metabolism and urea cycle|
ES Jung, HM Park, SM Hyun, JC Shon, M Lakshmanan, M Noh, HC Yeo, ...
Metabolomics 13, 1-14, 2017
|Inferring direct regulatory targets of a transcription factor in the DREAM2 challenge|
VB Vega, XY Woo, H Hamidi, HC Yeo, ZX Yeo, G Bourque, ND Clarke
Annals of the New York Academy of Sciences 1158 (1), 215-223, 2009