| Maftools: efficient and comprehensive analysis of somatic variants in cancer A Mayakonda, DC Lin, Y Assenov, C Plass, HP Koeffler Genome research 28 (11), 1747-1756, 2018 | 2824 | 2018 |
| Spatial intratumoral heterogeneity and temporal clonal evolution in esophageal squamous cell carcinoma JJ Hao, DC Lin, HQ Dinh, A Mayakonda, YY Jiang, C Chang, Y Jiang, ... Nature genetics 48 (12), 1500-1507, 2016 | 240 | 2016 |
| Genomic and epigenomic heterogeneity of hepatocellular carcinoma DC Lin, A Mayakonda, HQ Dinh, P Huang, L Lin, X Liu, L Ding, J Wang, ... Cancer research 77 (9), 2255-2265, 2017 | 185 | 2017 |
| Comprehensive mutational analysis of primary and relapse acute promyelocytic leukemia V Madan, P Shyamsunder, L Han, A Mayakonda, Y Nagata, ... Leukemia 30 (8), 1672-1681, 2016 | 143 | 2016 |
| Maftools: Efficient analysis, visualization and summarization of MAF files from large-scale cohort based cancer studies A Mayakonda, HP Koeffler BioRxiv, 052662, 2016 | 129 | 2016 |
| Targetable BET proteins-and E2F1-dependent transcriptional program maintains the malignancy of glioblastoma L Xu, Y Chen, A Mayakonda, L Koh, YK Chong, DL Buckley, ... Proceedings of the National Academy of Sciences 115 (22), E5086-E5095, 2018 | 104 | 2018 |
| Identification of distinct mutational patterns and new driver genes in oesophageal squamous cell carcinomas and adenocarcinomas DC Lin, HQ Dinh, JJ Xie, A Mayakonda, TC Silva, YY Jiang, LW Ding, ... Gut 67 (10), 1769-1779, 2018 | 102 | 2018 |
| Ordering of mutations in acute myeloid leukemia with partial tandem duplication of MLL (MLL-PTD) QY Sun, LW Ding, KT Tan, W Chien, A Mayakonda, DC Lin, XY Loh, ... Leukemia 31 (1), 1-10, 2017 | 75 | 2017 |
| BCL6 promotes glioma and serves as a therapeutic target L Xu, Y Chen, M Dutra-Clarke, A Mayakonda, M Hazawa, SE Savinoff, ... Proceedings of the National Academy of Sciences 114 (15), 3981-3986, 2017 | 69 | 2017 |
| Chromatin remodeling mediated by ARID1A is indispensable for normal hematopoiesis in mice L Han, V Madan, A Mayakonda, P Dakle, TW Woon, P Shyamsunder, ... Leukemia 33 (9), 2291-2305, 2019 | 62 | 2019 |
| Bromodomain and extraterminal proteins foster the core transcriptional regulatory programs and confer vulnerability in liposarcoma Y Chen, L Xu, A Mayakonda, ML Huang, D Kanojia, TZ Tan, P Dakle, ... Nature communications 10 (1), 1353, 2019 | 44 | 2019 |
| Globally altered epigenetic landscape and delayed osteogenic differentiation in H3. 3-G34W-mutant giant cell tumor of bone P Lutsik, A Baude, D Mancarella, S Öz, A Kühn, R Toth, J Hey, UH Toprak, ... Nature communications 11 (1), 5414, 2020 | 41 | 2020 |
| Identification of a novel enhancer of CEBPE essential for granulocytic differentiation P Shyamsunder, M Shanmugasundaram, A Mayakonda, P Dakle, ... Blood, The Journal of the American Society of Hematology 133 (23), 2507-2517, 2019 | 37 | 2019 |
| Variation in Crossover Frequencies Perturb Crossover Assurance Without Affecting Meiotic Chromosome Segregation in Saccharomyces cerevisiae GN Krishnaprasad, MT Anand, G Lin, MM Tekkedil, LM Steinmetz, ... Genetics 199 (2), 399-412, 2015 | 32 | 2015 |
| Mutational profiling of a MonoMAC syndrome family with GATA2 deficiency LW Ding, T Ikezoe, KT Tan, M Mori, A Mayakonda, W Chien, DC Lin, ... Leukemia 31 (1), 244-245, 2017 | 31 | 2017 |
| ARID1A and CEBPα cooperatively inhibit UCA1 transcription in breast cancer X Guo, Y Zhang, A Mayakonda, V Madan, LW Ding, LH Lin, S Zia, S Gery, ... Oncogene 37 (45), 5939-5951, 2018 | 30 | 2018 |
| Epigenetic analysis of patients with T-ALL identifies poor outcomes and a hypomethylating agent-responsive subgroup A Touzart, A Mayakonda, C Smith, J Hey, R Toth, A Cieslak, GP Andrieu, ... Science translational medicine 13 (595), eabc4834, 2021 | 21 | 2021 |
| Mutational profiling of acute lymphoblastic leukemia with testicular relapse LW Ding, QY Sun, A Mayakonda, KT Tan, W Chien, DC Lin, YY Jiang, ... Journal of hematology & oncology 10, 1-4, 2017 | 19 | 2017 |
| Diagnosis and relapse: cytogenetically normal acute myelogenous leukemia without FLT3-ITD or MLL-PTD W Chien, QY Sun, LW Ding, A Mayakonda, S Takao, L Liu, SL Lim, ... Leukemia 31 (3), 762-766, 2017 | 12 | 2017 |
| Methrix: an R/Bioconductor package for systematic aggregation and analysis of bisulfite sequencing data A Mayakonda, M Schönung, J Hey, RN Batra, C Feuerstein-Akgoz, ... Bioinformatics 36 (22-23), 5524-5525, 2020 | 7 | 2020 |
De-Chen Lin, Ph.DAssistant Professor, Ostrow School of Dentistry of USC, University of Southern CaliforniaVerified email at usc.edu
