Jie Zheng
Jie Zheng
Associate Professor, School of Information Science and Technology, ShanghaiTech University
Verified email at - Homepage
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Drug-Target Interaction Prediction by Learning From Local Information and Neighbors
JP Mei, CK Kwoh, P Yang, XL Li, J Zheng
Bioinformatics 29 (2), 238-245, 2013
Improving compound–protein interaction prediction by building up highly credible negative samples
H Liu, J Sun, J Guan, J Zheng, S Zhou
Bioinformatics 31 (12), i221-i229, 2015
Assignment of orthologous genes via genome rearrangement
X Chen, J Zheng, Z Fu, P Nan, Y Zhong, S Lonardi, T Jiang
IEEE/ACM Transactions on Computational Biology and Bioinformatics 2 (4), 302-315, 2005
SynLethDB: synthetic lethality database toward discovery of selective and sensitive anticancer drug targets
J Guo, H Liu, J Zheng
Nucleic acids research 44 (D1), D1011-D1017, 2016
Minimum Common String Partition Problem: Hardness and Approximations
A Goldstein, P Kolman, J Zheng
The Electronic Journal of Combinatorics 12 (R50), 1-18, 2005
SimBoolNet—a Cytoscape plugin for dynamic simulation of signaling networks
J Zheng, D Zhang, PF Przytycki, R Zielinski, J Capala, TM Przytycka
Bioinformatics 26 (1), 141-142, 2010
The crosstalk between EGF, IGF, and Insulin cell signaling pathways-computational and experimental analysis
R Zielinski, PF Przytycki, J Zheng, D Zhang, TM Przytycka, J Capala
BMC systems biology 3, 1-10, 2009
Oncogenic KRAS-associated gene signature defines co-targeting of CDK4/6 and MEK as a viable therapeutic strategy in colorectal cancer
M Pek, S Yatim, Y Chen, J Li, M Gong, X Jiang, F Zhang, J Zheng, X Wu, ...
Oncogene 36 (35), 4975-4986, 2017
Single-cell transcriptional analysis to uncover regulatory circuits driving cell fate decisions in early mouse development
H Chen, J Guo, SK Mishra, P Robson, M Niranjan, J Zheng
Bioinformatics 31 (7), 1060-1066, 2015
Computing the assignment of orthologous genes via genome rearrangement
X Chen, J Zheng, Z Fu, P Nan, Y Zhong, S Lonardi, T Jiang
Proc. 3rd Asia Pacific Bioinformatics Conference (APBC 2005), 363-378, 2005
Alternative splicing analysis in human monocytes and macrophages reveals MBNL1 as major regulator
H Liu, PA Lorenzini, F Zhang, S Xu, MSM Wong, J Zheng, X Roca
Nucleic Acids Research, 2018
Support for the Coelomata clade of animals from a rigorous analysis of the pattern of intron conservation
J Zheng, IB Rogozin, EV Koonin, TM Przytycka
Molecular Biology and Evolution 24 (11), 2583-2592, 2007
Sequencing of 15 622 gene‐bearing BAC s clarifies the gene‐dense regions of the barley genome
M Muñoz‐Amatriaín, S Lonardi, MC Luo, K Madishetty, JT Svensson, ...
The Plant Journal 84 (1), 216-227, 2015
Predicting antigenic variants of H1N1 influenza virus based on epidemics and pandemics using a stacking model
R Yin, VH Tran, X Zhou, J Zheng, CK Kwoh
PloS one 13 (12), e0207777, 2018
In Silico Prediction of Synthetic Lethality by Meta-Analysis of Genetic Interactions, Functions, and Pathways in Yeast and Human Cancer
M Wu, X Li, F Zhang, X Li, CK Kwoh, J Zheng
Cancer informatics 13 (Suppl 3), 71 - 80, 2014
Efficient selection of unique and popular oligos for large EST databases
J Zheng, TJ Close, T Jiang, S Lonardi
Bioinformatics 20 (13), 2101-2112, 2004
Syn-Lethality: An Integrative Knowledge Base of Synthetic Lethality towards Discovery of Selective Anticancer Therapies
X Li, SK Mishra, M Wu, F Zhang, J Zheng
BioMed Research International 2014, Article 196034, 7 pages, 2014
Detecting sequence polymorphisms associated with meiotic recombination hotspots in the human genome
J Zheng, PP Khil, RD Camerini-Otero, TM Przytycka
Genome biology 11, 1-15, 2010
HopLand: single-cell pseudotime recovery using continuous Hopfield network-based modeling of Waddington’s epigenetic landscape
J Guo, J Zheng
Bioinformatics 33 (14), i102-i109 (ISMB/ECCB 2017), 2017
OligoSpawn: a software tool for the design of overgo probes from large unigene datasets
J Zheng, J Svensson, K Madishetty, T Close, T Jiang, S Lonardi
BMC bioinformatics 7 (1), 7, 2006
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