Paul D Thomas
Paul D Thomas
Verified email at usc.edu - Homepage
Title
Cited by
Cited by
Year
The sequence of the human genome
JC Venter, MD Adams, EW Myers, PW Li, RJ Mural, GG Sutton, HO Smith, ...
science 291 (5507), 1304-1351, 2001
183682001
PANTHER: a library of protein families and subfamilies indexed by function
PD Thomas, MJ Campbell, A Kejariwal, H Mi, B Karlak, R Daverman, ...
Genome research 13 (9), 2129-2141, 2003
28632003
Large-scale gene function analysis with the PANTHER classification system
H Mi, A Muruganujan, JT Casagrande, PD Thomas
Nature protocols 8 (8), 1551-1566, 2013
21332013
Gene ontology consortium: going forward
Gene Ontology Consortium
Nucleic acids research 43 (D1), D1049-D1056, 2015
21252015
Principles of protein folding—a perspective from simple exact models
KA Dill, S Bromberg, K Yue, HS Chan, KM Ftebig, DP Yee, PD Thomas
Protein science 4 (4), 561-602, 1995
19231995
The gene ontology resource: 20 years and still GOing strong
Gene Ontology Consortium
Nucleic acids research 47 (D1), D330-D338, 2019
19062019
PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements
H Mi, X Huang, A Muruganujan, H Tang, C Mills, D Kang, PD Thomas
Nucleic acids research 45 (D1), D183-D189, 2017
19042017
InterPro: the integrative protein signature database
S Hunter, R Apweiler, TK Attwood, A Bairoch, A Bateman, D Binns, P Bork, ...
Nucleic acids research 37 (suppl_1), D211-D215, 2009
18742009
PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees
H Mi, A Muruganujan, PD Thomas
Nucleic acids research 41 (D1), D377-D386, 2012
15752012
PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools
H Mi, A Muruganujan, D Ebert, X Huang, PD Thomas
Nucleic acids research 47 (D1), D419-D426, 2019
14222019
Expansion of the Gene Ontology knowledgebase and resources
Gene Ontology Consortium
Nucleic acids research 45 (D1), D331-D338, 2017
1334*2017
InterPro in 2017—beyond protein family and domain annotations
RD Finn, TK Attwood, PC Babbitt, A Bateman, P Bork, AJ Bridge, ...
Nucleic acids research 45 (D1), D190-D199, 2017
12482017
The InterPro protein families database: the classification resource after 15 years
A Mitchell, HY Chang, L Daugherty, M Fraser, S Hunter, R Lopez, ...
Nucleic acids research 43 (D1), D213-D221, 2015
12292015
InterPro in 2011: new developments in the family and domain prediction database
S Hunter, P Jones, A Mitchell, R Apweiler, TK Attwood, A Bateman, ...
Nucleic acids research 40 (D1), D306-D312, 2012
11812012
InterPro in 2019: improving coverage, classification and access to protein sequence annotations
AL Mitchell, TK Attwood, PC Babbitt, M Blum, P Bork, A Bridge, SD Brown, ...
Nucleic acids research 47 (D1), D351-D360, 2019
10092019
The PANTHER database of protein families, subfamilies, functions and pathways
H Mi, B Lazareva-Ulitsky, R Loo, A Kejariwal, J Vandergriff, S Rabkin, ...
Nucleic acids research 33 (suppl_1), D284-D288, 2005
8802005
PANTHER version 10: expanded protein families and functions, and analysis tools
H Mi, S Poudel, A Muruganujan, JT Casagrande, PD Thomas
Nucleic acids research 44 (D1), D336-D342, 2016
8212016
Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios
AG Clark, S Glanowski, R Nielsen, PD Thomas, A Kejariwal, MA Todd, ...
Science 302 (5652), 1960-1963, 2003
7412003
The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database
ND Rawlings, AJ Barrett, PD Thomas, X Huang, A Bateman, RD Finn
Nucleic acids research 46 (D1), D624-D632, 2018
6912018
The BioPAX community standard for pathway data sharing
E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ...
Nature biotechnology 28 (9), 935-942, 2010
6772010
The system can't perform the operation now. Try again later.
Articles 1–20