Anne Bergeron

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Jens StoyeBielefeld University, GermanyVerified email at uni-bielefeld.de
Cedric ChauveProfessor of Mathematics, Simon Fraser UniversityVerified email at sfu.ca
Guylaine PoissonAssociate Professor, Information and Computer Sciences, University of Hawaii ManoaVerified email at hawaii.edu
Mahdi BelcaidInformation and Computer Sciences, University of Hawaii at ManoaVerified email at hawaii.edu
Krister M. SwensonCNRS, LIRMM, Université MontpellierVerified email at lirmm.fr
Annie ChateauMaître de conférences, Université de MontpellierVerified email at lirmm.fr
Mathieu BlanchetteProfessor of Computer Science, McGill UniversityVerified email at cs.mcgill.ca
Sylvie HamelProfesseure titulaire, Informatique et recherche opérationnelle, Université de MontréalVerified email at umontreal.ca
Christophe PaulCNRS LIRMMVerified email at lirmm.fr
Eric TannierInria, IXXI, ENS Lyon, Univ LyonVerified email at inria.fr
Marie-France SagotDirector of Research, InriaVerified email at inria.fr
Francois OuelletProfesseur au Département des Sciences Biologiques, UQAMVerified email at uqam.ca
Fathey SarhanProfessor of Biology,University of Québec at Montréal Verified email at uqam.ca
Roderic GuigoProfessor of Bioinformatics, Center for Genomic Regulation, Universitat Pompeu FabraVerified email at crg.cat
Vincent LacroixUniversité Lyon 1Verified email at univ-lyon1.fr
Michael SammethInstitute of Biophysics Carlos Chagas Filho (IBCCF), Federal University of Rio de Janeiro (UFRJ)Verified email at sammeth.net
Steffen HeberNorth Carolina State UniversityVerified email at ncsu.edu
Eric ChevetInserm U1242 or Université de RennesVerified email at inserm.fr
Amandine PERRINInstitut PasteurVerified email at pasteur.fr
Paul MedvedevPenn StateVerified email at cse.psu.edu

Anne Bergeron

Computer Science, Université du Québec à Montréal

Verified email at uqam.ca

Computational and mathematical biology


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A unifying view of genome rearrangements A Bergeron, J Mixtacki, J Stoye Algorithms in Bioinformatics: 6th International Workshop, WABI 2006, Zurich …, 2006	374	2006
FragAnchor: a large-scale predictor of glycosylphosphatidylinositol anchors in eukaryote protein sequences by qualitative scoring G Poisson, C Chauve, X Chen, A Bergeron Genomics, proteomics and bioinformatics 5 (2), 121-130, 2007	154	2007
Advances on sorting by reversals E Tannier, A Bergeron, MF Sagot Discrete Applied Mathematics 155 (6-7), 881-888, 2007	153	2007
A very elementary presentation of the Hannenhalli-Pevzner theory A Bergeron Combinatorial Pattern Matching, 106-117, 2001	137*	2001
Wheat EST resources for functional genomics of abiotic stress M Houde, M Belcaid, F Ouellet, J Danyluk, AF Monroy, A Dryanova, ... BMC genomics 7, 1-22, 2006	132	2006
The algorithmic of gene teams A Bergeron, S Corteel, M Raffinot Algorithms in Bioinformatics: Second International Workshop, WABI 2002 Rome …, 2002	130	2002
A very elementary presentation of the Hannenhalli–Pevzner theory A Bergeron Discrete Applied Mathematics 146 (2), 134-145, 2005	116	2005
On sorting by translocations A Bergeron, J Mixtacki, J Stoye Research in Computational Molecular Biology: 9th Annual International …, 2005	112	2005
Reversal distance without hurdles and fortresses A Bergeron, J Mixtacki, J Stoye Combinatorial Pattern Matching: 15th Annual Symposium, CPM 2004, Istanbul …, 2004	96	2004
On the similarity of sets of permutations and its applications to genome comparison A Bergeron, J Stoye International Computing and Combinatorics Conference, 68-79, 2003	96	2003
Gene teams: a new formalization of gene clusters for comparative genomics N Luc, JL Risler, A Bergeron, M Raffinot Computational biology and chemistry 27 (1), 59-67, 2003	85	2003
Computing Common Intervals of K Permutations, with Applications to Modular Decomposition of Graphs A Bergeron, C Chauve, F De Montgolfier, M Raffinot Algorithms–ESA 2005: 13th Annual European Symposium, Palma de Mallorca …, 2005	76	2005
Reconstructing ancestral gene orders using conserved intervals A Bergeron, M Blanchette, A Chateau, C Chauve Algorithms in Bioinformatics: 4th International Workshop, WABI 2004, Bergen …, 2004	73	2004
Exact transcriptome reconstruction from short sequence reads V Lacroix, M Sammeth, R Guigo, A Bergeron International Workshop on Algorithms in Bioinformatics, 50-63, 2008	69	2008
Perfect sorting by reversals is not always difficult S Bérard, A Bergeron, C Chauve, C Paul IEEE/ACM transactions on computational biology and bioinformatics 4 (1), 4-16, 2007	69	2007
Identification of genomic features using microsyntenies of domains: domain teams S Pasek, A Bergeron, JL Risler, A Louis, E Ollivier, M Raffinot Genome research 15 (6), 867-874, 2005	67	2005
Common intervals and sorting by reversals: a marriage of necessity A Bergeron, S Heber, J Stoye Bioinformatics 18 (Suppl 2), 2002	67	2002
On the properties of sequences of reversals that sort a signed permutation A Bergeron, C Chauve, T Hartman, K St-Onge Proceedings of JOBIM 2, 99-108, 2002	60	2002
An algorithmic view of gene teams MP Béal, A Bergeron, S Corteel, M Raffinot Theoretical Computer Science 320 (2-3), 395-418, 2004	59	2004
The evolution of the tape measure protein: units, duplications and losses M Belcaid, A Bergeron, G Poisson BMC bioinformatics 12, 1-12, 2011	54	2011

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