| Whole metagenome profiling reveals skin microbiome-dependent susceptibility to atopic dermatitis flare KR Chng, ASL Tay, C Li, AHQ Ng, J Wang, BK Suri, SA Matta, ... Nature microbiology 1 (9), 1-10, 2016 | 376 | 2016 |
| Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ... Nature methods 12 (7), 623-630, 2015 | 336 | 2015 |
| Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes D Bertrand, J Shaw, M Kalathiyappan, AHQ Ng, MS Kumar, C Li, ... Nature biotechnology 37 (8), 937-944, 2019 | 302 | 2019 |
| A global metagenomic map of urban microbiomes and antimicrobial resistance D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ... Cell 184 (13), 3376-3393. e17, 2021 | 286* | 2021 |
| Genus-Wide Comparative Genomics of Malassezia Delineates Its Phylogeny, Physiology, and Niche Adaptation on Human Skin G Wu, H Zhao, C Li, MP Rajapakse, WC Wong, J Xu, CW Saunders, ... PLoS genetics 11 (11), e1005614, 2015 | 268 | 2015 |
| Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022 | 249 | 2022 |
| Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment KR Chng, C Li, D Bertrand, AHQ Ng, JS Kwah, HM Low, C Tong, ... Nature medicine 26 (6), 941-951, 2020 | 195 | 2020 |
| INC-Seq: accurate single molecule reads using nanopore sequencing C Li, KR Chng, EJH Boey, AHQ Ng, A Wilm, N Nagarajan Gigascience 5 (1), s13742-016-0140-7, 2016 | 177 | 2016 |
| Metagenome-wide association analysis identifies microbial determinants of post-antibiotic ecological recovery in the gut KR Chng, TS Ghosh, YH Tan, T Nandi, IR Lee, AHQ Ng, C Li, ... Nature ecology & evolution 4 (9), 1256-1267, 2020 | 128* | 2020 |
| Tissue microbiome profiling identifies an enrichment of specific enteric bacteria in Opisthorchis viverrini associated cholangiocarcinoma KR Chng, SH Chan, AHQ Ng, C Li, A Jusakul, D Bertrand, A Wilm, ... EBioMedicine 8, 195-202, 2016 | 116 | 2016 |
| Determination of isoform-specific RNA structure with nanopore long reads JGA Aw, SW Lim, JX Wang, FRP Lambert, WT Tan, Y Shen, Y Zhang, ... Nature biotechnology 39 (3), 336-346, 2021 | 100 | 2021 |
| Predicting microbial interactions through computational approaches C Li, KMK Lim, KR Chng, N Nagarajan Methods 102, 12-19, 2016 | 60 | 2016 |
| Atopic dermatitis microbiomes stratify into ecologic dermotypes enabling microbial virulence and disease severity ASL Tay, C Li, T Nandi, KR Chng, AK Andiappan, VS Mettu, C de Cevins, ... Journal of Allergy and Clinical Immunology 147 (4), 1329-1340, 2021 | 40 | 2021 |
| An expectation-maximization algorithm enables accurate ecological modeling using longitudinal microbiome sequencing data C Li, KR Chng, JS Kwah, TV Av-Shalom, L Tucker-Kellogg, N Nagarajan Microbiome 7, 1-14, 2019 | 39 | 2019 |
| @ MInter: automated text-mining of microbial interactions KMK Lim, C Li, KR Chng, N Nagarajan Bioinformatics 32 (19), 2981-2987, 2016 | 36 | 2016 |
| Gut microbiome and metabolome profiling in Framingham heart study reveals cholesterol-metabolizing bacteria C Li, M Stražar, AMT Mohamed, JA Pacheco, RL Walker, T Lebar, S Zhao, ... Cell 187 (8), 1834-1852. e19, 2024 | 33 | 2024 |
| ConsensusDriver improves upon individual algorithms for predicting driver alterations in different cancer types and individual patients D Bertrand, S Drissler, BK Chia, JY Koh, C Li, C Suphavilai, IB Tan, ... Cancer research 78 (1), 290-301, 2018 | 22 | 2018 |
| Single-virion sequencing of lamivudine-treated HBV populations reveal population evolution dynamics and demographic history YO Zhu, PPK Aw, PF de Sessions, S Hong, LX See, LZ Hong, A Wilm, ... BMC genomics 18, 1-12, 2017 | 10 | 2017 |
| StrainPanDA: Linked reconstruction of strain composition and gene content profiles via pangenome‐based decomposition of metagenomic data H Hu, Y Tan, C Li, J Chen, Y Kou, ZZ Xu, YY Liu, Y Tan, L Dai iMeta 1 (3), e41, 2022 | 7 | 2022 |
| BEEM-Static: Accurate inference of ecological interactions from cross-sectional microbiome data C Li, TV Av-Shalom, JWG Tan, JS Kwah, KR Chng, N Nagarajan PLOS Computational Biology 17 (9), e1009343, 2021 | 5* | 2021 |
Niranjan NagarajanSenior Group Leader, Genome Institute of SingaporeVerified email at gis.a-star.edu.sg
