Constantin Pape
Constantin Pape
PostDoc, EMBL Heidelberg
Verified email at embl.de - Homepage
Title
Cited by
Cited by
Year
Multicut brings automated neurite segmentation closer to human performance
T Beier, C Pape, N Rahaman, T Prange, S Berg, DD Bock, A Cardona, ...
Nature Methods 14 (2), 101, 2017
992017
Prevalence of SARS-CoV-2 infection in children and their parents in Southwest Germany
B Tönshoff, B Müller, R Elling, H Renk, P Meissner, H Hengel, ...
JAMA pediatrics, 2021
572021
Integrative imaging reveals SARS-CoV-2-induced reshaping of subcellular morphologies
M Cortese, JY Lee, B Cerikan, CJ Neufeldt, VMJ Oorschot, S Köhrer, ...
Cell host & microbe 28 (6), 853-866. e5, 2020
552020
Accurate and versatile 3D segmentation of plant tissues at cellular resolution
A Wolny, L Cerrone, A Vijayan, R Tofanelli, AV Barro, M Louveaux, ...
Elife 9, e57613, 2020
502020
Synaptic Cleft Segmentation in Non-isotropic Volume Electron Microscopy of the Complete Drosophila Brain
L Heinrich, J Funke, C Pape, J Nunez-Iglesias, S Saalfeld
International Conference on Medical Image Computing and Computer-Assisted …, 2018
362018
The mutex watershed: efficient, parameter-free image partitioning
S Wolf, C Pape, A Bailoni, N Rahaman, A Kreshuk, U Kothe, ...
Proceedings of the European Conference on Computer Vision (ECCV), 546-562, 2018
332018
Profiling cellular diversity in sponges informs animal cell type and nervous system evolution
JM Musser, KJ Schippers, M Nickel, G Mizzon, AB Kohn, C Pape, ...
Science 374 (6568), 717-723, 2021
282021
Whole-body integration of gene expression and single-cell morphology
HM Vergara, C Pape, KI Meechan, V Zinchenko, C Genoud, AA Wanner, ...
Cell 184 (18), 4819-4837. e22, 2021
202021
The mutex watershed and its objective: Efficient, parameter-free graph partitioning
S Wolf, A Bailoni, C Pape, N Rahaman, A Kreshuk, U Köthe, ...
IEEE transactions on pattern analysis and machine intelligence, 2020
182020
Solving large multicut problems for connectomics via domain decomposition
C Pape, T Beier, P Li, V Jain, DD Bock, A Kreshuk
Proceedings of the IEEE International Conference on Computer Vision …, 2017
182017
Leveraging domain knowledge to improve microscopy image segmentation with lifted multicuts
C Pape, A Matskevych, A Wolny, J Hennies, G Mizzon, M Louveaux, ...
Frontiers in Computer Science 1, 6, 2019
13*2019
A generalized framework for agglomerative clustering of signed graphs applied to instance segmentation
A Bailoni, C Pape, S Wolf, T Beier, A Kreshuk, FA Hamprecht
arXiv preprint arXiv:1906.11713, 2019
102019
Microscopy‐based assay for semi‐quantitative detection of SARS‐CoV‐2 specific antibodies in human sera: A semi‐quantitative, high throughput, microscopy‐based assay expands …
C Pape, R Remme, A Wolny, S Olberg, S Wolf, L Cerrone, M Cortese, ...
BioEssays 43 (3), 2000257, 2021
92021
The Semantic Mutex Watershed for Efficient Bottom-Up Semantic Instance Segmentation
S Wolf, Y Li, C Pape, A Bailoni, A Kreshuk, FA Hamprecht
European Conference on Computer Vision, 208-224, 2020
72020
A versatile reporter system to monitor virus-infected cells and its application to dengue virus and SARS-CoV-2
F Pahmeier, CJ Neufeldt, B Cerikan, V Prasad, C Pape, V Laketa, ...
Journal of Virology 95 (4), e01715-20, 2020
62020
OME-NGFF: scalable format strategies for interoperable bioimaging data
J Moore, C Allan, S Besson, JM Burel, E Diel, D Gault, K Kozlowski, ...
BioRxiv, 2021
42021
Proposal-free volumetric instance segmentation from latent single-instance masks
A Bailoni, C Pape, S Wolf, A Kreshuk, FA Hamprecht
DAGM German Conference on Pattern Recognition, 331-344, 2020
22020
From shallow to deep: exploiting feature-based classifiers for domain adaptation in semantic segmentation
A Matskevych, A Wolny, C Pape, A Kreshuk
2021
MoBIE: A free and open-source platform for integration and cloud-based sharing of multi-modal correlative big image data
C Tischer, C Pape, K Meechan, V Zinchenko, M Schorb, H Vergara, ...
Microscopy and Microanalysis 27 (S1), 2588-2589, 2021
2021
Stateless actor-critic for instance segmentation with high-level priors
P Hilt, E Kaziakhmedov, S Bhide, M Leptin, C Pape, A Kreshuk
arXiv preprint arXiv:2107.02600, 2021
2021
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Articles 1–20