Anthony Gitter

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Citations	3510	2831
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Ziv Bar-JosephProfessor of Computational Biology and Machine Learning, School of Computer Science, Carnegie Mellon UniversityVerified email at andrew.cmu.edu
Shengchao LiuMila-UdeMVerified email at umontreal.ca
Casey S. GreeneBiomedical Informatics; Center for Health AI; University of Colorado Anschutz MedicalVerified email at cuanschutz.edu
Itamar SimonHebrew University Medical SchoolVerified email at mail.huji.ac.il
Alexandr A. KalininPostdoctoral Associate, Broad Institute of MIT and HarvardVerified email at broadinstitute.org
Gregory P WayUniversity of Colorado, Department of Biomedical InformaticsVerified email at cuanschutz.edu
Brett Beaulieu-JonesUniversity of ChicagoVerified email at uchicago.edu
Spencer S. EricksenScientist, University of Wisconsin-MadisonVerified email at wisc.edu
Joshua J. CoonProfessor of Chemistry and Biomolecular Chemistry, U. Of WisconsinVerified email at chem.wisc.edu
Daniel S. HimmelsteinRelated SciencesVerified email at upenn.edu
Marcel H SchulzProfessor of Computational Biology, Goethe University Frankfurt, GermanyVerified email at em.uni-frankfurt.de
Scott WildmanUniversity of Wisconsin-MadisonVerified email at wisc.edu
Jesse G. Meyer, Ph.D.Cedars-Sinai Medical CenterVerified email at cshs.org
Halie M RandoPostdoc at University of Colorado Anschutz Medical CampusVerified email at cuanschutz.edu
Alexandra J. LeeUniversity of PennsylvaniaVerified email at pennmedicine.upenn.edu
Enrico FerreroAutoimmunity Transplantation and Inflammation Bioinformatics, NovartisVerified email at novartis.com
Brian T. DoHarvard/MITVerified email at hms.harvard.edu
Alejandro Wolf-YadlinProfessor of Genome Sciences, University of WashingtonVerified email at uw.edu
Ian J MillerUniversity of Wisconsin - MadisonVerified email at wisc.edu
Simina BocaAstraZenecaVerified email at astrazeneca.com

Anthony Gitter

Associate Professor, University of Wisconsin-Madison; Morgridge Institute for Research

Verified email at biostat.wisc.edu - Homepage

Computational biology Bioinformatics


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Opportunities and obstacles for deep learning in biology and medicine T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ... Journal of The Royal Society Interface 15 (141), 20170387, 2018	1645	2018
Studying and modelling dynamic biological processes using time-series gene expression data Z Bar-Joseph, A Gitter, I Simon Nature Reviews Genetics 13 (8), 552-564, 2012	492	2012
Network-based interpretation of diverse high-throughput datasets through the Omics Integrator software package N Tuncbag, SJC Gosline, A Kedaigle, AR Soltis, A Gitter, E Fraenkel PLoS computational biology 12 (4), e1004879, 2016	136	2016
DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data M Schulz, W Devanny, A Gitter, S Zhong, J Ernst, Z Bar-Joseph BMC Systems Biology 6 (1), 104, 2012	136	2012
Discovering pathways by orienting edges in protein interaction networks A Gitter, J Klein-Seetharaman, A Gupta, Z Bar-Joseph Nucleic acids research 39 (4), e22-e22, 2010	129	2010
Backup in gene regulatory networks explains differences between binding and knockout results A Gitter, Z Siegfried, M Klutstein, O Fornes, B Oliva, I Simon, Z Bar‐Joseph Molecular Systems Biology 5 (1), 276, 2009	94	2009
Linking the signaling cascades and dynamic regulatory networks controlling stress responses A Gitter, M Carmi, N Barkai, Z Bar-Joseph Genome Research 23 (2), 365-376, 2013	82	2013
Loss-Balanced Task Weighting to Reduce Negative Transfer in Multi-Task Learning S Liu, Y Liang, A Gitter Proceedings of the Thirty-Third AAAI Conference on Artificial Intelligence …, 2019	81	2019
Learning Drug Functions from Chemical Structures with Convolutional Neural Networks and Random Forests JG Meyer, S Liu, IJ Miller, JJ Coon, A Gitter Journal of Chemical Information and Modeling 59 (10), 4438-4449, 2019	69	2019
Neural networks to learn protein sequence–function relationships from deep mutational scanning data S Gelman, SA Fahlberg, P Heinzelman, PA Romero, A Gitter Proceedings of the National Academy of Sciences 118 (48), e2104878118, 2021	56	2021
Practical model selection for prospective virtual screening S Liu, M Alnammi, SS Ericksen, AF Voter, GE Ananiev, JL Keck, ... Journal of chemical information and modeling 59 (1), 282-293, 2018	56	2018
Integrated systems biology analysis of KSHV latent infection reveals viral induction and reliance on peroxisome mediated lipid metabolism ZE Sychev, A Hu, TA DiMaio, A Gitter, ND Camp, WS Noble, ... PLoS pathogens 13 (3), e1006256, 2017	53	2017
Network inference with Granger causality ensembles on single-cell transcriptomics A Deshpande, LF Chu, R Stewart, A Gitter Cell Reports 38 (6), 110333, 2022	52	2022
Open collaborative writing with Manubot DS Himmelstein, V Rubinetti, DR Slochower, D Hu, VS Malladi, ... PLOS Computational Biology 15 (6), e1007128, 2019	49	2019
A Network-based Approach for Predicting Missing Pathway Interactions S Navlakha, A Gitter, Z Bar-Joseph PLoS Computational Biology 8 (8), e1002640, 2012	41	2012
Identifying proteins controlling key disease signaling pathways A Gitter, Z Bar-Joseph Bioinformatics 29 (13), i227-i236, 2013	37	2013
Computationally efficient measure of topological redundancy of biological and social networks R Albert, B DasGupta, R Hegde, GS Sivanathan, A Gitter, G Gürsoy, ... Physical Review E 84 (3), 036117, 2011	30	2011
Pathogenesis, symptomatology, and transmission of SARS-CoV-2 through analysis of viral genomics and structure HM Rando, AL MacLean, AJ Lee, R Lordan, S Ray, V Bansal, AN Skelly, ... mSystems 6 (5), e00095-21, 2021	29	2021
Synthesizing Signaling Pathways from Temporal Phosphoproteomic Data AS Köksal, K Beck, DR Cronin, A McKenna, ND Camp, S Srivastava, ... Cell Reports 24 (13), 3607-3618, 2018	25	2018
Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response ME MacGilvray, E Shishkova, D Chasman, M Place, A Gitter, JJ Coon, ... PLOS Computational Biology 13 (5), e1006088, 2018	22	2018

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