Models and algorithms for genome rearrangement with positional constraints KM Swenson, P Simonaitis, M Blanchette Algorithms for molecular biology 11, 1-10, 2016 | 17 | 2016 |
Finding local genome rearrangements P Simonaitis, KM Swenson Algorithms for Molecular Biology 13, 1-14, 2018 | 13 | 2018 |
Rearrangement scenarios guided by chromatin structure S Pulicani, P Simonaitis, E Rivals, KM Swenson Comparative Genomics: 15th International Workshop, RECOMB CG 2017, Barcelona …, 2017 | 7 | 2017 |
A general framework for genome rearrangement with biological constraints P Simonaitis, A Chateau, KM Swenson Algorithms for molecular biology 14 (1), 15, 2019 | 5 | 2019 |
Co-evolution of AR gene copy number and structural complexity in endocrine therapy resistant prostate cancer A Zivanovic, JT Miller, SA Munro, TP Knutson, Y Li, CN Passow, ... NAR cancer 5 (3), zcad045, 2023 | 4 | 2023 |
A general framework for genome rearrangement with biological constraints P Simonaitis, A Chateau, KM Swenson RECOMB International conference on Comparative Genomics, 49-71, 2018 | 3 | 2018 |
(Re) introducing regular graph languages S Gilroy, A Lopez, S Maneth, P Simonaitis Proceedings of the 15th Meeting on the Mathematics of Language, 100-113, 2017 | 3 | 2017 |
Weighted minimum-length rearrangement scenarios P Simonaitis, A Chateau, KM Swenson 19th International Workshop on Algorithms in Bioinformatics (WABI 2019), 2019 | 2 | 2019 |
A Maximum Parsimony Principle for Multichromosomal Complex Genome Rearrangements P Simonaitis, BJ Raphael 22nd International Workshop on Algorithms in Bioinformatics (WABI 2022), 2022 | 1 | 2022 |
Weighted Genome Rearrangements P Simonaitis Université Montpellier, 2020 | | 2020 |