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Soohyun Lee
Soohyun Lee
Senior Bioinformatics Scientist at Exact Sciences (formerly at HMS / Laronde)
Verified email at exactsciences.com
Title
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Cited by
Year
HiGlass: web-based visual exploration and analysis of genome interaction maps
P Kerpedjiev, N Abdennur, F Lekschas, C McCallum, K Dinkla, H Strobelt, ...
Genome biology 19 (1), 1-12, 2018
11462018
Sustainable data analysis with Snakemake
F Mölder, KP Jablonski, B Letcher, MB Hall, CH Tomkins-Tinch, V Sochat, ...
F1000Research 10, 2021
8322021
Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells
M Ghildiyal, H Seitz, MD Horwich, C Li, T Du, S Lee, J Xu, ELW Kittler, ...
Science 320 (5879), 1077-1081, 2008
8002008
Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution
S Lee, B Liu, S Lee, SX Huang, B Shen, SB Qian
Proceedings of the National Academy of Sciences 109 (37), E2424-E2432, 2012
6532012
Collapse of germline piRNAs in the absence of Argonaute3 reveals somatic piRNAs in flies
C Li, VV Vagin, S Lee, J Xu, S Ma, H Xi, H Seitz, MD Horwich, M Syrzycka, ...
Cell 137 (3), 509-521, 2009
5882009
Somatic mutation in single human neurons tracks developmental and transcriptional history
MA Lodato, MB Woodworth, S Lee, GD Evrony, BK Mehta, A Karger, ...
Science 350 (6256), 94-98, 2015
5752015
Hallmarks of pluripotency
A De Los Angeles, F Ferrari, R Xi, Y Fujiwara, N Benvenisty, H Deng, ...
Nature 525 (7570), 469-478, 2015
4702015
The Drosophila HP1 homolog Rhino is required for transposon silencing and piRNA production by dual-strand clusters
C Klattenhoff, H Xi, C Li, S Lee, J Xu, JS Khurana, F Zhang, N Schultz, ...
Cell 138 (6), 1137-1149, 2009
4492009
Comparative analysis of metazoan chromatin organization
JWK Ho, YL Jung, T Liu, BH Alver, S Lee, K Ikegami, KA Sohn, A Minoda, ...
Nature 512 (7515), 449-452, 2014
4112014
A comparison of genetically matched cell lines reveals the equivalence of human iPSCs and ESCs
J Choi, S Lee, W Mallard, K Clement, GM Tagliazucchi, H Lim, IY Choi, ...
Nature biotechnology 33 (11), 1173-1181, 2015
2912015
Linking transcriptional and genetic tumor heterogeneity through allele analysis of single-cell RNA-seq data
J Fan, HO Lee, S Lee, D Ryu, S Lee, C Xue, SJ Kim, K Kim, N Barkas, ...
Genome research 28 (8), 1217-1227, 2018
2012018
Accurate quantification of transcriptome from RNA-Seq data by effective length normalization
S Lee, CH Seo, B Lim, JO Yang, J Oh, M Kim, S Lee, B Lee, C Kang, ...
Nucleic Acids Research 39 (2), e9-e9, 2011
1332011
NGSCheckMate: software for validating sample identity in next-generation sequencing studies within and across data types
S Lee, S Lee, S Ouellette, WY Park, EA Lee, PJ Park
Nucleic acids research 45 (11), e103-e103, 2017
1092017
DUSP9 Modulates DNA Hypomethylation in Female Mouse Pluripotent Stem Cells
J Choi, K Clement, AJ Huebner, J Webster, CM Rose, J Brumbaugh, ...
Cell Stem Cell 20 (5), 706-719. e7, 2017
752017
The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data
SB Reiff, AJ Schroeder, K Kırlı, A Cosolo, C Bakker, S Lee, AD Veit, ...
Nature communications 13 (1), 1-11, 2022
682022
HiNT: a computational method for detecting copy number variations and translocations from Hi-C data
S Wang, S Lee, C Chu, D Jain, P Kerpedjiev, GM Nelson, JM Walsh, ...
Genome biology 21 (1), 1-15, 2020
652020
Relative codon adaptation index, a sensitive measure of codon usage bias
S Lee, S Weon, S Lee, C Kang
Evolutionary Bioinformatics 6, 47, 2010
632010
Comprehensive identification of transposable element insertions using multiple sequencing technologies
C Chu, R Borges-Monroy, VV Viswanadham, S Lee, H Li, EA Lee, PJ Park
Nature Communications 12 (1), 1-12, 2021
592021
Failure to replicate the STAP cell phenomenon
A De Los Angeles, F Ferrari, Y Fujiwara, R Mathieu, S Lee, S Lee, HC Tu, ...
Nature 525 (7570), E6-E9, 2015
502015
Quantitative analysis of single nucleotide polymorphisms within copy number variation
S Lee, S Kasif, Z Weng, CR Cantor
PLoS One 3 (12), e3906, 2008
432008
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Articles 1–20