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Ehsaneddin Asgari
Ehsaneddin Asgari
Postdoctoral Researcher, Helmholtz Center for Infection Research / VW Data:Lab / UC Berkeley Alum.
Verified email at berkeley.edu - Homepage
Title
Cited by
Cited by
Year
Continuous distributed representation of biological sequences for deep proteomics and genomics
E Asgari, MRK Mofrad
PloS one 10 (11), e0141287, 2015
8432015
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20, 1-23, 2019
3532019
Predicting antimicrobial resistance in Pseudomonas aeruginosa with machine learning‐enabled molecular diagnostics
A Khaledi, A Weimann, M Schniederjans, E Asgari, TH Kuo, A Oliver, ...
EMBO molecular medicine 12 (3), e10264, 2020
1422020
MicroPheno: Predicting environments and host phenotypes from 16S rRNA gene sequencing using a k-mer based representation of shallow sub-samples
E Asgari, K Garakani, AC McHardy, MRK Mofrad
Bioinformatics 34 (13), i32-i42, 2018
832018
Probabilistic variable-length segmentation of protein sequences for discriminative motif discovery (DiMotif) and sequence embedding (ProtVecX)
E Asgari, AC McHardy, MRK Mofrad
Scientific reports 9 (1), 3577, 2019
742019
Past, present, future: a computational investigation of the typology of tense in 1000 languages
E Asgari, H Schütze
Proceedings of the 2017 Conference on Empirical Methods in Natural Language …, 2017
582017
Molecular insights into the mechanisms of SUN1 oligomerization in the nuclear envelope
Z Jahed, D Fadavi, UT Vu, E Asgari, GWG Luxton, MRK Mofrad
Biophysical journal 114 (5), 1190-1203, 2018
442018
Comparing Fifty Natural Languages and Twelve Genetic Languages Using Word Embedding Language Divergence (WELD) as a Quantitative Measure of Language Distance
E Asgari, MRK Mofrad
In Proceedings of the NAACL-HLT Workshop on Multilingual and Cross-lingual …, 2016
342016
DeepPrime2Sec: deep learning for protein secondary structure prediction from the primary sequences
E Asgari, N Poerner, AC McHardy, MRK Mofrad
BioRxiv, 705426, 2019
262019
The Touch\'e23-ValueEval Dataset for Identifying Human Values behind Arguments
N Mirzakhmedova, J Kiesel, M Alshomary, M Heinrich, N Handke, X Cai, ...
arXiv preprint arXiv:2301.13771, 2023
252023
EpitopeVec: linear epitope prediction using deep protein sequence embeddings
A Bahai, E Asgari, MRK Mofrad, A Kloetgen, AC McHardy
Bioinformatics 37 (23), 4517-4525, 2021
252021
Integration of scientific and social networks
M Neshati, D Hiemstra, E Asgari, H Beigy
World wide web 17, 1051-1079, 2014
242014
Nonsymbolic Text Representation
H Schuetze, H Adel, E Asgari
arXiv preprint arXiv:1610.00479, 2016
232016
DiTaxa: nucleotide-pair encoding of 16S rRNA for host phenotype and biomarker detection
E Asgari, PC Münch, TR Lesker, AC McHardy, MRK Mofrad
Bioinformatics 35 (14), 2498-2500, 2019
18*2019
Peptide microarrays coupled to machine learning reveal individual epitopes from human antibody responses with neutralizing capabilities against SARS-CoV-2
SK Hotop, S Reimering, A Shekhar, E Asgari, U Beutling, C Dahlke, ...
Emerging microbes & infections 11 (1), 1037-1048, 2022
172022
Linguistic Resources & Topic Models for the Analysis of Persian Poems
E Asgari, JC Chappelier
In Proceedings of the NAACL-HLT Workshop on Computational Linguistics for …, 2013
172013
Confirming the themes and interpretive unity of Ghazal poetry using topic models
E Asgari, M Ghassemi, MA Finlayson
Neural Information Processing Systems (NIPS) Workshop for Topic Models, 2013
142013
TripletProt: deep representation learning of proteins based on siamese networks
E Nourani, E Asgari, AC McHardy, MRK Mofrad
IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (6 …, 2021
132021
EmbLexChange at SemEval-2020 task 1: Unsupervised embedding-based detection of lexical semantic changes
E Asgari, C Ringlstetter, H Schütze
Proceedings of the Fourteenth Workshop on Semantic Evaluation, 201-207, 2020
132020
UniSent: Universal Adaptable Sentiment Lexica for 1000+ Languages
E Asgari, F Braune, B Roth, C Ringlstetter, MRK Mofrad
Proceedings of The 12th Language Resources and Evaluation Conference (LREC …, 2020
122020
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Articles 1–20