| The Genome of the Natural Genetic Engineer Agrobacterium tumefaciens C58 DW Wood, JC Setubal, R Kaul, DE Monks, JP Kitajima, VK Okura, Y Zhou, ... science 294 (5550), 2317-2323, 2001 | 992 | 2001 |
| Hybrid approach of relation network and localized graph convolutional filtering for breast cancer subtype classification S Rhee, S Seo, S Kim IJCAI 2018, arXiv preprint arXiv:1711.05859, 2017 | 243 | 2017 |
| Integrated analysis of DNA methylation and gene expression reveals specific signaling pathways associated with platinum resistance in ovarian cancer M Li, C Balch, JS Montgomery, M Jeong, JH Chung, P Yan, THM Huang, ... BMC medical genomics 2, 1-13, 2009 | 242 | 2009 |
| MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression S Nam, M Li, K Choi, C Balch, S Kim, KP Nephew Nucleic acids research 37 (suppl_2), W356-W362, 2009 | 201 | 2009 |
| Oncogenic ETS proteins mimic activated RAS/MAPK signaling in prostate cells PC Hollenhorst, MW Ferris, MA Hull, H Chae, S Kim, BJ Graves Genes & development 25 (20), 2147-2157, 2011 | 189 | 2011 |
| Prognostic DNA methylation biomarkers in ovarian cancer SH Wei, C Balch, HH Paik, YS Kim, RL Baldwin, S Liyanarachchi, L Li, ... Clinical Cancer Research 12 (9), 2788-2794, 2006 | 176 | 2006 |
| CpG island shore methylation regulates caveolin-1 expression in breast cancer X Rao, J Evans, H Chae, J Pilrose, S Kim, P Yan, RL Huang, HC Lai, ... Oncogene 32 (38), 4519-4528, 2013 | 144 | 2013 |
| Computational analysis of microRNA profiles and their target genes suggests significant involvement in breast cancer antiestrogen resistance F Xin, M Li, C Balch, M Thomson, M Fan, Y Liu, SM Hammond, S Kim, ... Bioinformatics 25 (4), 430-434, 2009 | 143 | 2009 |
| DeepFam: deep learning based alignment-free method for protein family modeling and prediction S Seo, M Oh, Y Park, S Kim Bioinformatics 34 (13), i254-i262, 2018 | 114 | 2018 |
| De novo identification of LTR retrotransposons in eukaryotic genomes M Rho, JH Choi, S Kim, M Lynch, H Tang BMC genomics 8, 1-16, 2007 | 100 | 2007 |
| New anti-cancer strategies: epigenetic therapies and biomarkers C Balch, JS Montgomery, HI Paik, S Kim, TH Huang, KP Nephew Front Biosci 10 (1), 897-931, 2005 | 97 | 2005 |
| A fast multiple string pattern matching algorithm S Kim, Y Kim Proceedings of 17th AoM/IAoM Conference on Computer Science, 44-49, 1999 | 92 | 1999 |
| Recurrent fusion transcripts detected by whole‐transcriptome sequencing of 120 primary breast cancer samples J Kim, S Kim, S Ko, Y In, HG Moon, SK Ahn, MK Kim, M Lee, JH Hwang, ... Genes, Chromosomes and Cancer 54 (11), 681-691, 2015 | 90 | 2015 |
| A review on compound-protein interaction prediction methods: data, format, representation and model S Lim, Y Lu, CY Cho, I Sung, J Kim, Y Kim, S Park, S Kim Computational and Structural Biotechnology Journal 19, 1541-1556, 2021 | 89 | 2021 |
| Integrated analysis of genome-wide DNA methylation and gene expression profiles in molecular subtypes of breast cancer JK Rhee, K Kim, H Chae, J Evans, P Yan, BT Zhang, J Gray, P Spellman, ... Nucleic acids research 41 (18), 8464-8474, 2013 | 79 | 2013 |
| GABA-stimulated adipose-derived stem cells suppress subcutaneous adipose inflammation in obesity I Hwang, K Jo, KC Shin, JI Kim, Y Ji, YJ Park, J Park, YG Jeon, S Ka, ... Proceedings of the National Academy of Sciences 116 (24), 11936-11945, 2019 | 69 | 2019 |
| Measuring intratumor heterogeneity by network entropy using RNA-seq data Y Park, S Lim, JW Nam, S Kim Scientific reports 6 (1), 37767, 2016 | 61 | 2016 |
| Genome comparisons based on profiles of metabolic pathways L Liao, S Kim, JF Tomb Proceedings of the 6th International Conference on Knowledge-Based …, 2002 | 61 | 2002 |
| SREBP1c-PARP1 axis tunes anti-senescence activity of adipocytes and ameliorates metabolic imbalance in obesity G Lee, YY Kim, H Jang, JS Han, H Nahmgoong, YJ Park, SM Han, C Cho, ... Cell metabolism 34 (5), 702-718. e5, 2022 | 60 | 2022 |
| Determining the effect of DNA methylation on gene expression in cancer cells CJ Lee, J Evans, K Kim, H Chae, S Kim Gene Function Analysis, 161-178, 2014 | 57 | 2014 |
Kenneth P. NephewJerry W. and Peggy S. Throgmartin Chair in OncologyVerified email at indiana.edu
