Susannah Tringe

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Philip HugenholtzAustralian Centre for Ecogenomics, SCMB, The University of QueenslandVerified email at uq.edu.au
Jeff DanglProfessor--HHMI and Dept of Biology; UNC-Chapel HillVerified email at email.unc.edu
Julien TremblayConsultant, Astek Canada - Roche/GenentechVerified email at contractors.roche.com
Jillian BANFIELDUniversity of California BerkeleyVerified email at berkeley.edu
Brian C. ThomasCEO/Founder, Metagenomi.coVerified email at metagenomi.co
Derek Severi LundbergSwedish University of Agricultural Sciences (SLU)Verified email at slu.se
Matthias HessUC DavisVerified email at ucdavis.edu
Shaomei HeUniversity of Wisconsin-MadisonVerified email at wisc.edu
Kenneth H. WilliamsLawrence Berkeley National LaboratoryVerified email at lbl.gov
Asaf SalamovJoint Genome InstituteVerified email at lbl.gov
Ruth E. LeyDepartment of Microbiome Science, Max Planck Institute for Biology, TübingenVerified email at tuebingen.mpg.de
Laura HugAssociate Professor, University of Waterloo Department of BiologyVerified email at uwaterloo.ca
Nikos C KyrpidesJoint Genome Institute, Lawrence Berkeley National LaboratoryVerified email at lbl.gov
Axel ViselLawrence Berkeley National LaboratoryVerified email at lbl.gov
Kyle R. FrischkornSenior Editor, Nature MicrobiologyVerified email at us.nature.com
Boran KartalGroup Leader, Microbial Physiology Group, Max Planck Institute for Marine MicrobiologyVerified email at mpi-bremen.de
Kelly C. WrightonColorado State UniversityVerified email at colostate.edu
Alex CopelandJoint Genome InstituteVerified email at lbl.gov
Peer BorkDirector of EMBL HeidelbergVerified email at embl.de
Christian von MeringProfessor of Computational Biology, University of Zurich and Swiss Institute of BioinformaticsVerified email at imls.uzh.ch

Susannah Tringe

Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory

Verified email at lbl.gov - Homepage

Metagenomics bioinformatics genomics


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Defining the core Arabidopsis thaliana root microbiome DS Lundberg, SL Lebeis, SH Paredes, S Yourstone, J Gehring, S Malfatti, ... Nature 488 (7409), 86-90, 2012	2813	2012
Comparative metagenomics of microbial communities SG Tringe, C Von Mering, A Kobayashi, AA Salamov, K Chen, HW Chang, ... Science 308 (5721), 554-557, 2005	2045	2005
Plant–microbiome interactions: from community assembly to plant health P Trivedi, JE Leach, SG Tringe, T Sa, BK Singh Nature reviews microbiology 18 (11), 607-621, 2020	2022	2020
Diversity and heritability of the maize rhizosphere microbiome under field conditions JA Peiffer, A Spor, O Koren, Z Jin, SG Tringe, JL Dangl, ES Buckler, ... Proceedings of the National Academy of Sciences 110 (16), 6548-6553, 2013	1798	2013
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ... Nature biotechnology 35 (8), 725-731, 2017	1681	2017
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite F Warnecke, P Luginbühl, N Ivanova, M Ghassemian, TH Richardson, ... Nature 450 (7169), 560-565, 2007	1546	2007
Metagenomic discovery of biomass-degrading genes and genomes from cow rumen M Hess, A Sczyrba, R Egan, TW Kim, H Chokhawala, G Schroth, S Luo, ... Science 331 (6016), 463-467, 2011	1496	2011
Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy CMK Sieber, AJ Probst, A Sharrar, BC Thomas, M Hess, SG Tringe, ... Nature microbiology 3 (7), 836-843, 2018	1092	2018
Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa SL Lebeis, SH Paredes, DS Lundberg, N Breakfield, J Gehring, ... Science 349 (6250), 860-864, 2015	1057	2015
Host genotype and age shape the leaf and root microbiomes of a wild perennial plant MR Wagner, DS Lundberg, TG Del Rio, SG Tringe, JL Dangl, ... Nature communications 7 (1), 12151, 2016	835	2016
Metagenomics: DNA sequencing of environmental samples SG Tringe, EM Rubin Nature reviews genetics 6 (11), 805-814, 2005	754	2005
Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species D Coleman‐Derr, D Desgarennes, C Fonseca‐Garcia, S Gross, ... New Phytologist 209 (2), 798-811, 2016	700	2016
A renaissance for the pioneering 16S rRNA gene SG Tringe, P Hugenholtz Current opinion in microbiology 11 (5), 442-446, 2008	677	2008
MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm YW Wu, YH Tang, SG Tringe, BA Simmons, SW Singer Microbiome 2, 1-18, 2014	671	2014
A genomic catalog of Earth’s microbiomes S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ... Nature biotechnology 39 (4), 499-509, 2021	636	2021
Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill OU Mason, TC Hazen, S Borglin, PSG Chain, EA Dubinsky, JL Fortney, ... The ISME journal 6 (9), 1715-1727, 2012	627	2012
Genomic expansion of domain archaea highlights roles for organisms from new phyla in anaerobic carbon cycling CJ Castelle, KC Wrighton, BC Thomas, LA Hug, CT Brown, MJ Wilkins, ... Current biology 25 (6), 690-701, 2015	585	2015
Primer and platform effects on 16S rRNA tag sequencing J Tremblay, K Singh, A Fern, ES Kirton, S He, T Woyke, J Lee, F Chen, ... Frontiers in microbiology 6, 771, 2015	558	2015
Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling LA Hug, CJ Castelle, KC Wrighton, BC Thomas, I Sharon, KR Frischkorn, ... Microbiome 1, 1-17, 2013	539	2013
Genomic features of bacterial adaptation to plants A Levy, I Salas Gonzalez, M Mittelviefhaus, S Clingenpeel, ... Nature genetics 50 (1), 138-150, 2018	526	2018

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