Davit Potoyan
Davit Potoyan
Assistant Professor, Iowa State University
Verified email at iastate.edu - Homepage
Title
Cited by
Cited by
Year
Energy landscape analyses of disordered histone tails reveal special organization of their conformational dynamics
DA Potoyan, GA Papoian
Journal of the American Chemical Society 133 (19), 7405-7415, 2011
982011
Recent successes in coarse‐grained modeling of DNA
DA Potoyan, A Savelyev, GA Papoian
Wiley Interdisciplinary Reviews: Computational Molecular Science, 2013
882013
Regulation of the H4 tail binding and folding landscapes via Lys-16 acetylation
DA Potoyan, GA Papoian
Proceedings of the National Academy of Sciences, 2012
712012
Molecular stripping in the NF-κB/IκB/DNA genetic regulatory network
DA Potoyan, W Zheng, EA Komives, PG Wolynes
Proceedings of the National Academy of Sciences 113 (1), 110-115, 2016
582016
The acetylation landscape of the H4 histone tail: disentangling the interplay between the specific and cumulative effects
D Winogradoff, I Echeverria, DA Potoyan, GA Papoian
Journal of the American Chemical Society 137 (19), 6245-6253, 2015
502015
Anomalous diffusion, spatial coherence, and viscoelasticity from the energy landscape of human chromosomes
M Di Pierro, DA Potoyan, PG Wolynes, JN Onuchic
Proceedings of the National Academy of Sciences 115 (30), 7753-7758, 2018
492018
A stochastic and dynamical view of pluripotency in mouse embryonic stem cells
YT Lin, PG Hufton, EJ Lee, DA Potoyan
PLoS computational biology 14 (2), e1006000, 2018
312018
On the dephasing of genetic oscillators
D Potoyan, P Wolynes
Proceedings of the National Academy of Sciences 111, 2391-2396, 2014
292014
Computing free energy of a large-scale allosteric transition in adenylate kinase using all atom explicit solvent simulations
DA Potoyan, PI Zhuravlev, GA Papoian
The Journal of Physical Chemistry B 116 (5), 1709-1715, 2012
252012
Molecular stripping, targets and decoys as modulators of oscillations in the NF-κB/IκBα/DNA genetic network
Z Wang, DA Potoyan, PG Wolynes
Journal of The Royal Society Interface 13 (122), 20160606, 2016
192016
Dichotomous noise models of gene switches
DA Potoyan, PG Wolynes
The Journal of chemical physics 143 (19), 11B612_1, 2015
192015
Resolving the NFκB heterodimer binding paradox: Strain and frustration guide the binding of dimeric transcription factors
DA Potoyan, C Bueno, W Zheng, EA Komives, PG Wolynes
Journal of the American Chemical Society 139 (51), 18558-18566, 2017
182017
PEST control of molecular stripping of NFκB from DNA transcription sites
DA Potoyan, W Zheng, DU Ferreiro, PG Wolynes, EA Komives
The Journal of Physical Chemistry B 120 (33), 8532-8538, 2016
162016
Computing free energies of protein conformations from explicit solvent simulations
PI Zhuravlev, S Wu, DA Potoyan, M Rubinstein, GA Papoian
Methods 52 (1), 115-121, 2010
142010
Phase Transition of RNA-protein Complexes into Ordered Hollow Condensates
I Alshareedah, MM Moosa, M Raju, D Potoyan, PR Banerjee
bioRxiv, 2020
122020
Stochastic dynamics of genetic broadcasting networks
D Potoyan, P Wolynes
Physical Review E 96 (5), 052305, 2017
62017
Sequence-encoded and composition-dependent protein-RNA interactions control multiphasic condensate topologies
T Kaur, M Raju, I Alshareedah, RB Davis, DA Potoyan, PR Banerjee
bioRxiv, 2020
42020
Mesoscale liquid model of chromatin recapitulates nuclear order of eukaryotes.
R Laghmach, M Di Pierro, DA Potoyan
Biophysical Journal 117, 1-11, 2019
32019
Hybrid thermophilic/mesophilic enzymes reveal a role for conformational disorder in regulation of bacterial Enzyme I
RR Dotas, TT Nguyen, CE Stewart Jr, R Ghirlando, DA Potoyan, V Venditti
Journal of Molecular Biology, 2020
22020
Modeling the therapeutic efficacy of NFκB synthetic decoy oligodeoxynucleotides (ODNs)
Z Wang, DA Potoyan, PG Wolynes
BMC systems biology 12 (1), 4, 2018
22018
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