Jian Ma
Jian Ma
Ray and Stephanie Lane Professor of Computational Biology, Carnegie Mellon University
Verified email at - Homepage
Cited by
Cited by
Evolutionary and biomedical insights from the rhesus macaque genome
RA Gibbs, J Rogers, MG Katze, R Bumgarner, GM Weinstock, ER Mardis, ...
Science 316 (5822), 222-234, 2007
Analyses of pig genomes provide insight into porcine demography and evolution
MAM Groenen, AL Archibald, H Uenishi, CK Tuggle, Y Takeuchi, ...
Nature 491 (7424), 393-398, 2012
The yak genome and adaptation to life at high altitude
Q Qiu, G Zhang, T Ma, W Qian, J Wang, Z Ye, C Cao, Q Hu, J Kim, ...
Nature Genetics 44 (8), 946, 2012
A community effort to assess and improve drug sensitivity prediction algorithms
JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ...
Nature Biotechnology 32 (12), 1202, 2014
Comparative and demographic analysis of orang-utan genomes
DP Locke, LDW Hillier, WC Warren, KC Worley, LV Nazareth, DM Muzny, ...
Nature 469 (7331), 529-533, 2011
The 4D nucleome project
J Dekker, AS Belmont, M Guttman, VO Leshyk, JT Lis, S Lomvardas, ...
Nature 549 (7671), 219-226, 2017
Finding the missing honey bee genes: lessons learned from a genome upgrade
CG Elsik, KC Worley, AK Bennett, M Beye, F Camara, CP Childers, ...
BMC Genomics 15, 86, 2014
Transcriptional regulation of autophagy by an FXR–CREB axis
S Seok, T Fu, SE Choi, Y Li, R Zhu, S Kumar, X Sun, G Yoon, Y Kang, ...
Nature 516 (7529), 108-111, 2014
A rewritable, random-access DNA-based storage system
SMHT Yazdi, Y Yuan, J Ma, H Zhao, O Milenkovic
Scientific Reports 5, 14138, 2015
The human body at cellular resolution: the NIH Human Biomolecular Atlas Program
H Consortium
Nature 574, 187–192, 2019
A multi-organ nucleus segmentation challenge
N Kumar, R Verma, D Anand, Y Zhou, OF Onder, E Tsougenis, H Chen, ...
IEEE Transactions on Medical Imaging, 2019
The Genome 10K Project: a way forward
KP Koepfli, B Paten, Genome 10K Community of Scientists, SJ O’Brien
Annu. Rev. Anim. Biosci. 3 (1), 57-111, 2015
Reconstructing contiguous regions of an ancestral genome
J Ma, L Zhang, BB Suh, BJ Raney, RC Burhans, WJ Kent, M Blanchette, ...
Genome Research 16 (12), 1557-1565, 2006
Mapping 3D genome organization relative to nuclear compartments using TSA-Seq as a cytological ruler
Y Chen, Y Zhang, Y Wang, L Zhang, EK Brinkman, SA Adam, R Goldman, ...
Journal of Cell Biology 217 (11), 4025-4048, 2018
Mulan: multiple-sequence local alignment and visualization for studying function and evolution
I Ovcharenko, GG Loots, BM Giardine, M Hou, J Ma, RC Hardison, ...
Genome Research 15 (1), 184-194, 2005
Draft genome sequence of the Tibetan antelope
RL Ge, Q Cai, YY Shen, A San, L Ma, Y Zhang, X Yi, Y Chen, L Yang, ...
Nature Communications 4, 1858, 2013
RNA interference knockdown of DNA methyl-transferase 3 affects gene alternative splicing in the honey bee
H Li-Byarlay, Y Li, H Stroud, S Feng, TC Newman, M Kaneda, KK Hou, ...
Proceedings of the National Academy of Sciences 110 (31), 12750-12755, 2013
DNA-based storage: Trends and methods
SMHT Yazdi, HM Kiah, E Garcia-Ruiz, J Ma, H Zhao, O Milenkovic
IEEE Transactions on Molecular, Biological and Multi-Scale Communications 1 …, 2015
DawnRank: discovering personalized driver genes in cancer
JP Hou, J Ma
Genome Medicine 6 (7), 56, 2014
Hyper-SAGNN: a self-attention based graph neural network for hypergraphs
R Zhang, Y Zou, J Ma
ICLR, 2020
The system can't perform the operation now. Try again later.
Articles 1–20