| PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes NY Yu, JR Wagner, MR Laird, G Melli, S Rey, R Lo, P Dao, SC Sahinalp, ... Bioinformatics 26 (13), 1608-1615, 2010 | 2186 | 2010 |
| Single-cell map of diverse immune phenotypes in the breast tumor microenvironment E Azizi, AJ Carr, G Plitas, AE Cornish, C Konopacki, S Prabhakaran, ... Cell 174 (5), 1293-1308. e36, 2018 | 1180 | 2018 |
| Combinatorial QSAR modeling of chemical toxicants tested against Tetrahymena pyriformis H Zhu, A Tropsha, D Fourches, A Varnek, E Papa, P Gramatica, T Oberg, ... Journal of chemical information and modeling 48 (4), 766-784, 2008 | 310 | 2008 |
| Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery F Hormozdiari, I Hajirasouliha, P Dao, F Hach, D Yorukoglu, C Alkan, ... Bioinformatics 26 (12), i350-i357, 2010 | 267 | 2010 |
| Applicability domains for classification problems: benchmarking of distance to models for Ames mutagenicity set I Sushko, S Novotarskyi, R Körner, AK Pandey, A Cherkasov, J Li, ... Journal of chemical information and modeling 50 (12), 2094-2111, 2010 | 229 | 2010 |
| Biomolecular network motif counting and discovery by color coding N Alon, P Dao, I Hajirasouliha, F Hormozdiari, SC Sahinalp Bioinformatics 24 (13), i241-i249, 2008 | 225 | 2008 |
| Large scale analysis of the mutational landscape in HT-SELEX improves aptamer discovery J Hoinka, A Berezhnoy, P Dao, ZE Sauna, E Gilboa, TM Przytycka Nucleic acids research 43 (12), 5699-5707, 2015 | 119 | 2015 |
| Optimally discriminative subnetwork markers predict response to chemotherapy P Dao, K Wang, C Collins, M Ester, A Lapuk, SC Sahinalp Bioinformatics 27 (13), i205-i213, 2011 | 118 | 2011 |
| Alu repeat discovery and characterization within human genomes F Hormozdiari, C Alkan, M Ventura, I Hajirasouliha, M Malig, F Hach, ... Genome research 21 (6), 840-849, 2011 | 114 | 2011 |
| MEMCover: integrated analysis of mutual exclusivity and functional network reveals dysregulated pathways across multiple cancer types YA Kim, DY Cho, P Dao, TM Przytycka Bioinformatics 31 (12), i284-i292, 2015 | 92 | 2015 |
| Inferring cancer subnetwork markers using density-constrained biclustering P Dao, R Colak, R Salari, F Moser, E Davicioni, A Schönhuth, M Ester Bioinformatics 26 (18), i625-i631, 2010 | 75 | 2010 |
| Mapping the Protein Interaction Network in Methicillin-Resistant Staphylococcus aureus A Cherkasov, M Hsing, R Zoraghi, LJ Foster, RH See, N Stoynov, J Jiang, ... Journal of proteome research 10 (3), 1139-1150, 2011 | 72 | 2011 |
| CLIIQ: Accurate Comparative Detection and Quantification of Expressed Isoforms in a Population YY Lin, P Dao, F Hach, M Bakhshi, F Mo, A Lapuk, C Collins, S Sahinalp Algorithms in Bioinformatics, 178-189, 2012 | 60 | 2012 |
| AptaTRACE elucidates RNA sequence-structure motifs from selection trends in HT-SELEX experiments P Dao, J Hoinka, M Takahashi, J Zhou, M Ho, Y Wang, F Costa, JJ Rossi, ... Cell systems 3 (1), 62-70, 2016 | 58 | 2016 |
| Natural genetic variation reveals key features of epigenetic and transcriptional memory in virus-specific CD8 T cells J van der Veeken, Y Zhong, R Sharma, L Mazutis, P Dao, D Pe’er, ... Immunity 50 (5), 1202-1217. e7, 2019 | 42 | 2019 |
| HIT'nDRIVE: patient-specific multidriver gene prioritization for precision oncology R Shrestha, E Hodzic, T Sauerwald, P Dao, K Wang, J Yeung, ... Genome research 27 (9), 1573-1588, 2017 | 41 | 2017 |
| BeWith: A Between-Within method to discover relationships between cancer modules via integrated analysis of mutual exclusivity, co-occurrence and functional interactions P Dao, YA Kim, D Wojtowicz, S Madan, R Sharan, TM Przytycka PLoS computational biology 13 (10), e1005695, 2017 | 38 | 2017 |
| Open community challenge reveals molecular network modules with key roles in diseases S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ... bioRxiv, 265553, 2018 | 24 | 2018 |
| ORMAN: optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms P Dao, I Numanagić, YY Lin, F Hach, E Karakoc, N Donmez, C Collins, ... Bioinformatics 30 (5), 644-651, 2014 | 19 | 2014 |
| Whole-transcriptome profiling of thyroid nodules identifies expression-based signatures for accurate thyroid cancer diagnosis SM Wiseman, Z Haddad, B Walker, IA Vergara, T Sierocinski, A Crisan, ... The Journal of Clinical Endocrinology & Metabolism 98 (10), 4072-4079, 2013 | 18 | 2013 |
Cenk SahinalpSenior Investigator, Cancer Data Science Lab, National Cancer Institute, NIHVerified email at nih.gov
