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Roham Razaghi
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Transcriptome assembly from long-read RNA-seq alignments with StringTie2
S Kovaka, AV Zimin, GM Pertea, R Razaghi, SL Salzberg, M Pertea
Genome biology 20, 1-13, 2019
10832019
Nanopore native RNA sequencing of a human poly (A) transcriptome
RE Workman, AD Tang, PS Tang, M Jain, JR Tyson, R Razaghi, ...
Nature methods 16 (12), 1297-1305, 2019
5712019
Epigenetic patterns in a complete human genome
A Gershman, MEG Sauria, X Guitart, MR Vollger, PW Hook, SJ Hoyt, ...
Science 376 (6588), eabj5089, 2022
1792022
Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing
I Lee, R Razaghi, T Gilpatrick, M Molnar, A Gershman, N Sadowski, ...
Nature methods 17 (12), 1191-1199, 2020
1622020
Direct detection of RNA modifications and structure using single-molecule nanopore sequencing
W Stephenson, R Razaghi, S Busan, KM Weeks, W Timp, P Smibert
Cell genomics 2 (2), 2022
922022
De novo genome assembly of the tobacco hornworm moth (Manduca sexta)
A Gershman, TG Romer, Y Fan, R Razaghi, WA Smith, W Timp
G3 11 (1), jkaa047, 2021
282021
Temozolomide-induced guanine mutations create exploitable vulnerabilities of guanine-rich DNA and RNA regions in drug-resistant gliomas
DM Tiek, B Erdogdu, R Razaghi, L Jin, N Sadowski, C Alamillo-Ferrer, ...
Science Advances 8 (25), eabn3471, 2022
122022
Plasma virome and the risk of blood-borne infection in persons with substance use disorder
AJ Kandathil, AL Cox, K Page, D Mohr, R Razaghi, KG Ghanem, ...
Nature communications 12 (1), 6909, 2021
122021
Modbamtools: Analysis of single-molecule epigenetic data for long-range profiling, heterogeneity, and clustering
R Razaghi, PW Hook, S Ou, MC Schatz, KD Hansen, M Jain, W Timp
bioRxiv, 2022.07. 07.499188, 2022
72022
Uncalled4 improves nanopore DNA and RNA modification detection via fast and accurate signal alignment
S Kovaka, PW Hook, KM Jenike, V Shivakumar, LB Morina, R Razaghi, ...
bioRxiv, 2024
12024
Signal analysis of nanopore RNA sequencing to interrogate poly (A) tails and post-transcriptional modifications
R Razaghi, T Gilpatrick, N Sadowski, P Tang, R Workman, J Simpson, ...
Biophysical Journal 116 (3), 356a, 2019
12019
Using Nanopore Sequencing to Interrogate the Genome and Epigenome
R Razaghi
Johns Hopkins University, 2022
2022
Targeting destabilized DNA G-quadruplexes and aberrant splicing in drug-resistant 1 glioblastoma 2
DM Tiek, R Razaghi, L Jin, N Sadowski, C Alamillo-Ferrer, JR Hogg, ...
bioRxiv, 661660, 2019
2019
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Articles 1–13