RNA polymerase II clustering through carboxy-terminal domain phase separation M Boehning, C Dugast-Darzacq, M Rankovic, AS Hansen, T Yu, ... Nature structural & molecular biology 25 (9), 833-840, 2018 | 427 | 2018 |
RNA polymerase II clustering through carboxy-terminal domain phase separation M Boehning, C Dugast-Darzacq, M Rankovic, AS Hansen, T Yu, ... Nature structural & molecular biology 25 (9), 833-840, 2018 | 427 | 2018 |
FISH-quant: automatic counting of transcripts in 3D FISH images F Mueller, A Senecal, K Tantale, H Marie-Nelly, N Ly, O Collin, E Basyuk, ... Nature methods 10 (4), 277-278, 2013 | 331 | 2013 |
Normalization of a chromosomal contact map A Cournac, H Marie-Nelly, M Marbouty, R Koszul, J Mozziconacci BMC genomics 13 (1), 1-13, 2012 | 208 | 2012 |
Evidence for DNA-mediated nuclear compartmentalization distinct from phase separation DT McSwiggen, AS Hansen, SS Teves, H Marie-Nelly, Y Hao, AB Heckert, ... Elife 8, e47098, 2019 | 185 | 2019 |
A predictive computational model of the dynamic 3D interphase yeast nucleus H Wong, H Marie-Nelly, S Herbert, P Carrivain, H Blanc, R Koszul, ... Current Biology 22 (20), 1881-1890, 2012 | 184 | 2012 |
Metagenomic chromosome conformation capture (meta3C) unveils the diversity of chromosome organization in microorganisms M Marbouty, A Cournac, JF Flot, H Marie-Nelly, J Mozziconacci, R Koszul Elife 3, e03318, 2014 | 157 | 2014 |
High-quality genome (re) assembly using chromosomal contact data H Marie-Nelly, M Marbouty, A Cournac, JF Flot, G Liti, DP Parodi, S Syan, ... Nature communications 5 (1), 1-10, 2014 | 153 | 2014 |
Contact genomics: scaffolding and phasing (meta) genomes using chromosome 3D physical signatures JF Flot, H Marie-Nelly, R Koszul FEBS letters 589 (20), 2966-2974, 2015 | 57 | 2015 |
A dynamic interplay of enhancer elements regulates Klf4 expression in naïve pluripotency L Xie, SE Torigoe, J Xiao, DH Mai, L Li, FP Davis, P Dong, H Marie-Nelly, ... Genes & development 31 (17), 1795-1808, 2017 | 45 | 2017 |
Filling annotation gaps in yeast genomes using genome-wide contact maps H Marie-Nelly, M Marbouty, A Cournac, G Liti, G Fischer, C Zimmer, ... Bioinformatics 30 (15), 2105-2113, 2014 | 40 | 2014 |
instaGRAAL: chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder L Baudry, N Guiglielmoni, H Marie-Nelly, A Cormier, M Marbouty, K Avia, ... Genome biology 21 (1), 1-22, 2020 | 26 | 2020 |
Transient DNA binding induces RNA polymerase II compartmentalization during herpesviral infection distinct from phase separation DT McSwiggen, AS Hansen, H Marie-Nelly, S Teves, A Heckert, ... BioRxiv, 375071, 2018 | 6 | 2018 |
A Bayesian nonparametric approach to super-resolution single-molecule localization MI Gabitto, H Marie-Nelly, A Pakman, A Pataki, X Darzacq, MI Jordan The Annals of Applied Statistics 15 (4), 1742-1766, 2021 | 3 | 2021 |
Chromosome-level quality scaffolding of brown algal genomes using InstaGRAAL, a proximity ligation-based scaffolder L Baudry, M Marbouty, H Marie-Nelly, A Cormier, N Guiglielmoni, K Avia, ... bioRxiv, 2019 | 2 | 2019 |
A probabilistic approach for genome assembly from high-throughput chromosome conformation capture data H Marie-Nelly Paris 6, 2013 | 1 | 2013 |
Method, device, and computer program for assembling pieces of chromosomes from one or several organisms R Koszul, M Marbouty, HD Marie-nelly, A Cournac US Patent App. 15/321,066, 2017 | | 2017 |
RNA polymerase II clustering through CTD phase separation M Boehning, C Dugast-Darzacq, M Rankovic, AS Hansen, T Yu, ... | | |