| A robust benchmark for detection of germline large deletions and insertions JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ... Nature biotechnology 38 (11), 1347-1355, 2020 | 205 | 2020 |
| PhISCS: a combinatorial approach for subperfect tumor phylogeny reconstruction via integrative use of single-cell and bulk sequencing data S Malikic, FR Mehrabadi, S Ciccolella, MK Rahman, C Ricketts, ... Genome research 29 (11), 1860-1877, 2019 | 70 | 2019 |
| A robust benchmark for germline structural variant detection JM Zook, NF Hansen, ND Olson, LM Chapman, JC Mullikin, C Xiao, ... BioRxiv, 664623, 2019 | 62 | 2019 |
| Inferring cancer progression from Single-Cell Sequencing while allowing mutation losses S Ciccolella, C Ricketts, M Soto Gomez, M Patterson, D Silverbush, ... Bioinformatics 37 (3), 326-333, 2021 | 37 | 2021 |
| A deep learning approach to diagnostic classification of prostate cancer using pathology–radiology fusion P Khosravi, M Lysandrou, M Eljalby, Q Li, E Kazemi, P Zisimopoulos, ... Journal of Magnetic Resonance Imaging 54 (2), 462-471, 2021 | 30 | 2021 |
| A cancer pharmacogenomic screen powering crowd-sourced advancement of drug combination prediction MP Menden, D Wang, Y Guan, MJ Mason, B Szalai, KC Bulusu, T Yu, ... BioRxiv, 200451, 2017 | 25 | 2017 |
| Identification of strain-specific sequences that distinguish a Mycoplasma gallisepticum vaccine strain from field isolates C Ricketts, L Pickler, J Maurer, S Ayyampalayam, M García, ... Journal of Clinical Microbiology 55 (1), 244-252, 2017 | 17 | 2017 |
| Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway J Carrot-Zhang, X Yao, S Devarakonda, A Deshpande, JS Damrauer, ... Cell reports 34 (5), 108707, 2021 | 15 | 2021 |
| VALOR2: characterization of large-scale structural variants using linked-reads F Karaoğlanoğlu, C Ricketts, E Ebren, ME Rasekh, I Hajirasouliha, ... Genome biology 21 (1), 1-11, 2020 | 12 | 2020 |
| Meltos: multi-sample tumor phylogeny reconstruction for structural variants C Ricketts, D Seidman, V Popic, F Hormozdiari, S Batzoglou, ... Bioinformatics 36 (4), 1082-1090, 2020 | 8 | 2020 |
| Using LICHeE and BAMSE for reconstructing cancer phylogenetic trees C Ricketts, V Popic, H Toosi, I Hajirasouliha Current protocols in bioinformatics 62 (1), e49, 2018 | 7 | 2018 |
| Characterization of segmental duplications and large inversions using Linked-Reads F Karaoglanoglu, C Ricketts, ME Rasekh, E Ebren, I Hajirasouliha, ... bioRxiv, 394528, 2018 | 4 | 2018 |
| Biopsy-free prediction of prostate cancer aggressiveness using deep learning and radiology imaging P Khosravi, M Lysandrou, M Eljalby, M Brendel, Q Li, E Kazemi, J Barnes, ... medRxiv, 2019.12. 16.19015057, 2019 | 2 | 2019 |
| Method Development for Comprehensive Analysis of Somatic Structural Variants and Tumor Phylogeny Inference C Ricketts Weill Medical College of Cornell University, 2020 | | 2020 |
