Anaïs Baudot

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Alfonso ValenciaICREA Professor. Barcelona Supercomputing Center.Verified email at bsc.es
Christine BrunCNRSVerified email at inserm.fr
Tabares-Seisdedos, Rafael (ORCID: 0...University of Valencia (ROR: 043nxc105) - CIBERSAM (ROR: 009byq155) - INCLIVA (ROR: 059wbyv33)Verified email at uv.es
Elisabeth RemyDirectrice de Recherche, CNRS, Aix-Marseille UniversitéVerified email at univ-amu.fr
Alberto ValdeolivasRoche Pharma Research and Early Development, Basel, SwitzerlandVerified email at roche.com
Laurent TichitUniversité d'Aix-MarseilleVerified email at univ-amu.fr
Kristina IbáñezSenior data scientist in genomicsVerified email at qmul.ac.uk
Enrico GlaabUniversity of LuxembourgVerified email at uni.lu
Jon Sánchez-ValleBarcelona Supercomputing CenterVerified email at bsc.es
Héctor TejeroCentro Nacional de Investigaciones Oncológicas (CNIO)Verified email at cnio.es
Laura CantiniChargé de Recherce CNRS, Junior Group Leader (G5) Institut PasteurVerified email at pasteur.fr
Denis ThieffryProfessor of Systems Biology, Institut de Biologie de l'Ecole Normale Supérieure (IBENS), ParisVerified email at ens.fr
Ozan OzisikInserm U976 HIPIVerified email at inserm.fr
Åsmund FlobakMD, MSc, PhD-Fellow, Norwegian University of Science and TechnologyVerified email at ntnu.no
Vera PancaldiCancer Research Centre of ToulouseVerified email at inserm.fr
Gilles DidierInstitut Montpelliérain Alexander GrothendiekVerified email at umontpellier.fr
Daniel MarbachRoche Pharma Research and Early Development, Basel, SwitzerlandVerified email at roche.com
Anthony BaptistaPostdoctoral Research Assistant, Queen Mary University of LondonVerified email at qmul.ac.uk
Aurélien NaldiInria, FranceVerified email at inria.fr
Pooya ZakeriAssociate Professor - SCML group, Department of Informatics, University of OsloVerified email at ifi.uio.no

Anaïs Baudot

CNRS - INSERM - Aix*Marseille Université

Verified email at univ-amu.fr - Homepage

Systems and Networks Biology Bioinformatics Computational Biology


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EnrichNet: network-based gene set enrichment analysis E Glaab, A Baudot, N Krasnogor, R Schneider, A Valencia Bioinformatics 28 (18), i451-i457, 2012	364	2012
Assessment of network module identification across complex diseases S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ... Nature methods 16 (9), 843-852, 2019	290	2019
Random Walk with Restart on Multiplex and Heterogeneous Biological Networks A Valdeolivas, L Tichit, C Navarro, S Perrin, G Odelin, N Levy, P Cau, ... Bioinformatics, 2018	257	2018
Molecular Evidence for the Inverse Comorbidity between Central Nervous System Disorders and Cancers Detected by Transcriptomic Meta-analyses K Ibáñez, C Boullosa, R Tabarés-Seisdedos, A Baudot, A Valencia PLoS genetics 10 (2), e1004173, 2014	206	2014
Benchmarking joint multi-omics dimensionality reduction approaches for the study of cancer L Cantini, P Zakeri, C Hernandez, A Naldi, D Thieffry, E Remy, A Baudot Nature Communications 12 (1), 1-12, 2021	166	2021
No paradox, no progress: inverse cancer comorbidity in people with other complex diseases R Tabarés-Seisdedos, N Dumont, A Baudot, JM Valderas, J Climent, ... The lancet oncology 12 (6), 604-608, 2011	156	2011
Discovery of drug synergies in gastric cancer cells predicted by logical modeling Å Flobak, A Baudot, E Remy, L Thommesen, D Thieffry, M Kuiper, ... PLoS computational biology 11 (8), e1004426, 2015	130	2015
TopoGSA: network topological gene set analysis E Glaab, A Baudot, N Krasnogor, A Valencia Bioinformatics 26 (9), 1271-1272, 2010	102	2010
A molecular hypothesis to explain direct and inverse co-morbidities between Alzheimer's Disease, Glioblastoma and Lung cancer. J Sánchez-Valle, H Tejero, K Ibáñez, JL Portero, M Krallinger, ... Scientific reports 7 (1), 4474, 2017	101	2017
The functional landscape of Hsp27 reveals new cellular processes such as DNA repair and alternative splicing and proposes novel anticancer targets M Katsogiannou, C Andrieu, V Baylot, A Baudot, NJ Dusetti, O Gayet, ... Molecular & Cellular Proteomics 13 (12), 3585-3601, 2014	75	2014
Extending pathways and processes using molecular interaction networks to analyse cancer genome data E Glaab, A Baudot, N Krasnogor, A Valencia BMC bioinformatics 11 (1), 1-11, 2010	73	2010
Interactome mapping of the phosphatidylinositol 3-kinase-mammalian target of rapamycin pathway identifies deformed epidermal autoregulatory factor-1 as a new glycogen synthase … F Pilot-Storck, E Chopin, JF Rual, A Baudot, P Dobrokhotov, ... Molecular & Cellular Proteomics 9 (7), 1578-1593, 2010	73	2010
Identifying communities from multiplex biological networks G Didier, C Brun, A Baudot PeerJ 3, e1525, 2015	72	2015
The Gastrin and Cholecystokinin Receptors mediated signaling network: A scaffold for data analysis and new hypotheses on regulatory mechanisms S Tripathi, Å Flobak, K Chawla, A Baudot, JN Doni, N Skjøndal-Bar, ...	61	2015
A scale of functional divergence for yeast duplicated genes revealed from analysis of the protein-protein interaction network A Baudot, B Jacq, C Brun Genome biology 5 (10), 1-13, 2004	50	2004
Clust&See: A Cytoscape plugin for the identification, visualization and manipulation of network clusters L Spinelli, P Gambette, CE Chapple, B Robisson, A Baudot, H Garreta, ... BioSystems 113 (2), 91-95, 2013	49	2013
Mutated genes, pathways and processes in tumours A Baudot, V de la Torre, A Valencia EMBO reports 11 (10), 805-810, 2010	46	2010
Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer J Forés-Martos, F Catalá-López, J Sánchez-Valle, K Ibáñez, H Tejero, ... Molecular autism 10 (1), 1-16, 2019	45	2019
From cancer genomes to cancer models: bridging the gaps A Baudot, FX Real, JMG Izarzugaza, A Valencia EMBO reports 10 (4), 359-366, 2009	42	2009
MultiVERSE: a multiplex and multiplex-heterogeneous network embedding approach L Pio-Lopez, A Valdeolivas, L Tichit, É Remy, A Baudot Scientific Reports 11 (1), 1-20, 2021	40	2021

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