Sara-Jane Dunn
Sara-Jane Dunn
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Oligodendrocyte dynamics in the healthy adult CNS: evidence for myelin remodeling
KM Young, K Psachoulia, RB Tripathi, SJ Dunn, L Cossell, D Attwell, ...
Neuron 77 (5), 873-885, 2013
Chaste: an open source C++ library for computational physiology and biology
GR Mirams, CJ Arthurs, MO Bernabeu, R Bordas, J Cooper, A Corrias, ...
PLoS computational biology 9 (3), e1002970, 2013
Defining an essential transcription factor program for naive pluripotency
SJ Dunn, G Martello, B Yordanov, S Emmott, AG Smith
Science 344 (6188), 1156-1160, 2014
Computational models reveal a passive mechanism for cell migration in the crypt
SJ Dunn, IS Näthke, JM Osborne
PloS one 8 (11), e80516, 2013
Ten simple rules for effective computational research
JM Osborne, MO Bernabeu, M Bruna, B Calderhead, J Cooper, ...
PLoS Computational Biology 10 (3), e1003506, 2014
A two-dimensional model of the colonic crypt accounting for the role of the basement membrane and pericryptal fibroblast sheath
SJ Dunn, PL Appleton, SA Nelson, IS Näthke, DJ Gavaghan, JM Osborne
PLoS computational biology 8 (5), e1002515, 2012
A method to identify and analyze biological programs through automated reasoning
B Yordanov, SJ Dunn, H Kugler, A Smith, G Martello, S Emmott
NPJ systems biology and applications 2 (1), 1-16, 2016
A protein phosphatase network controls the temporal and spatial dynamics of differentiation commitment in human epidermis
A Mishra, B Oules, AO Pisco, T Ly, K Liakath-Ali, G Walko, P Viswanathan, ...
Elife 6, e27356, 2017
A common molecular logic determines embryonic stem cell self‐renewal and reprogramming
SJ Dunn, MA Li, E Carbognin, A Smith, G Martello
The EMBO journal 38 (1), e100003, 2019
Modelling the role of the basement membrane beneath a growing epithelial monolayer
SJ Dunn, AG Fletcher, SJ Chapman, DJ Gavaghan, JM Osborne
Journal of theoretical biology 298, 82-91, 2012
Entropy sorting of single-cell RNA sequencing data reveals the inner cell mass in the human pre-implantation embryo
A Radley, E Corujo-Simon, J Nichols, A Smith, SJ Dunn
Stem Cell Reports 18 (1), 47-63, 2023
Combined changes in Wnt signaling response and contact inhibition induce altered proliferation in radiation-treated intestinal crypts
SJ Dunn, JM Osborne, PL Appleton, I Näthke
Molecular biology of the cell 27 (11), 1863-1874, 2016
Computational stem cell biology: open questions and guiding principles
P Cahan, D Cacchiarelli, SJ Dunn, M Hemberg, SMC de Sousa Lopes, ...
Cell Stem Cell 28 (1), 20-32, 2021
Automated synthesis and analysis of switching gene regulatory networks
Y Shavit, B Yordanov, SJ Dunn, CM Wintersteiger, T Otani, Y Hamadi, ...
Biosystems 146, 26-34, 2016
Formal analysis of network motifs
H Kugler, SJ Dunn, B Yordanov
Computational Methods in Systems Biology: 16th International Conference …, 2018
Formal analysis of network motifs links structure to function in biological programs
SJ Dunn, H Kugler, B Yordanov
IEEE/ACM Transactions on Computational Biology and Bioinformatics 18 (1 …, 2019
How computational models contribute to our understanding of the germ line
K Atwell, SJ Dunn, JM Osborne, H Kugler, EJA Hubbard
Molecular reproduction and development 83 (11), 944-957, 2016
Automated reasoning for the synthesis and analysis of biological programs
SJ Dunn, B Yordanov
Automated Reasoning for Systems Biology and Medicine, 37-62, 2019
Automated formal reasoning to uncover molecular programs of self-renewal
SJ Dunn
Computational Stem Cell Biology: Methods and Protocols, 79-105, 2019
Switching gene regulatory networks
Y Shavit, B Yordanov, SJ Dunn, CM Wintersteiger, Y Hamadi, H Kugler
Information Processing in Cells and Tissues: 10th International Conference …, 2015
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