Simon Jupp
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A practical guide to building owl ontologies using protégé 4 and co-ode tools edition1. 2
M Horridge, S Jupp, G Moulton, A Rector, R Stevens, C Wroe
The university of Manchester 107, 2009
Expression Atlas update—an integrated database of gene and protein expression in humans, animals and plants
R Petryszak, M Keays, YA Tang, NA Fonseca, E Barrera, T Burdett, ...
Nucleic acids research 44 (D1), D746-D752, 2016
Expression Atlas update: from tissues to single cells
I Papatheodorou, P Moreno, J Manning, AMP Fuentes, N George, ...
Nucleic acids research 48 (D1), D77-D83, 2020
The Polygenic Score Catalog as an open database for reproducibility and systematic evaluation
SA Lambert, L Gil, S Jupp, SC Ritchie, Y Xu, A Buniello, A McMahon, ...
Nature Genetics 53 (4), 420-425, 2021
Expression Atlas update—a database of gene and transcript expression from microarray-and sequencing-based functional genomics experiments
R Petryszak, T Burdett, B Fiorelli, NA Fonseca, M Gonzalez-Porta, ...
Nucleic acids research 42 (D1), D926-D932, 2014
Open Targets Genetics: systematic identification of trait-associated genes using large-scale genetics and functional genomics
M Ghoussaini, E Mountjoy, M Carmona, G Peat, EM Schmidt, A Hercules, ...
Nucleic acids research 49 (D1), D1311-D1320, 2021
The EBI RDF platform: linked open data for the life sciences
S Jupp, J Malone, J Bolleman, M Brandizi, M Davies, L Garcia, A Gaulton, ...
Bioinformatics 30 (9), 1338-1339, 2014
A compendium of uniformly processed human gene expression and splicing quantitative trait loci
N Kerimov, JD Hayhurst, K Peikova, JR Manning, P Walter, L Kolberg, ...
Nature genetics 53 (9), 1290-1299, 2021
The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species
KA Shefchek, NL Harris, M Gargano, N Matentzoglu, D Unni, M Brush, ...
Nucleic acids research 48 (D1), D704-D715, 2020
A new Ontology Lookup Service at EMBL-EBI.
S Jupp, T Burdett, C Leroy, HE Parkinson
SWAT4LS 2, 118-119, 2015
Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data
JA McMurry, N Juty, N Blomberg, T Burdett, T Conlin, N Conte, M Courtot, ...
PLoS biology 15 (6), e2001414, 2017
Ordo: an ontology connecting rare disease, epidemiology and genetic data
D Vasant, L Chanas, J Malone, M Hanauer, A Olry, S Jupp, PN Robinson, ...
Proceedings of ISMB 30, 2014
Populous: a tool for building OWL ontologies from templates
S Jupp, M Horridge, L Iannone, J Klein, S Owen, J Schanstra, ...
BMC bioinformatics 13, 1-12, 2012
Ontology mapping for semantically enabled applications
I Harrow, R Balakrishnan, E Jimenez-Ruiz, S Jupp, J Lomax, J Reed, ...
Drug discovery today 24 (10), 2068-2075, 2019
eQTL Catalogue: a compendium of uniformly processed human gene expression and splicing QTLs
N Kerimov, JD Hayhurst, K Peikova, JR Manning, P Walter, L Kolberg, ...
BioRxiv, 2020.01. 29.924266, 2020
Ten simple rules for selecting a bio-ontology
J Malone, R Stevens, S Jupp, T Hancocks, H Parkinson, C Brooksbank
PLoS computational biology 12 (2), e1004743, 2016
A simple standard for sharing ontological mappings (SSSOM)
N Matentzoglu, JP Balhoff, SM Bello, C Bizon, M Brush, TJ Callahan, ...
Database 2022, 2022
Developing a kidney and urinary pathway knowledge base
S Jupp, J Klein, J Schanstra, R Stevens
Journal of biomedical semantics 2, 1-17, 2011
Linking rare and common disease: mapping clinical disease-phenotypes to ontologies in therapeutic target validation
S Sarntivijai, D Vasant, S Jupp, G Saunders, AP Bento, D Gonzalez, ...
Journal of biomedical semantics 7, 1-11, 2016
The KUPKB: a novel Web application to access multiomics data on kidney disease
J Klein, S Jupp, P Moulos, M Fernandez, B Buffin‐Meyer, A Casemayou, ...
The FASEB Journal 26 (5), 2145-2153, 2012
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Articles 1–20