Krister M. Swenson

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Bernard M.E. MoretISCB Fellow, Professor emeritus, Computer & Communication Sciences, EPFLVerified email at epfl.ch
Anne BergeronComputer Science, Université du Québec à MontréalVerified email at uqam.ca
Yu LinSchool of Computing, Australian National UniversityVerified email at anu.edu.au
Vaibhav RajanAssistant Professor, Department of Information Systems & Analytics, School of Computing, NUSVerified email at nus.edu.sg
Mark MarronMicrosoft ResearchVerified email at microsoft.com
Nicholas D. PattengaleVerified email at cs.unm.edu
Manuel LafondUniversité de SherbrookeVerified email at usherbrooke.ca
Pijus SimonaitisVerified email at lirmm.fr
David SankoffUniversity of OttawaVerified email at uottawa.ca
Annie ChateauMaître de conférences, Université de MontpellierVerified email at lirmm.fr
Mathieu BlanchetteProfessor of Computer Science, McGill UniversityVerified email at cs.mcgill.ca
Eric TannierInria, IXXI, ENS Lyon, Univ LyonVerified email at inria.fr
David H. ArdellAssociate Professor, Molecular and Cell Biology / Data Science and Computing / UC MercedVerified email at ucmerced.edu
Jijun TangUniversity of South CarolinaVerified email at cse.sc.edu
Alexandros StamatakisFoundation for Research and Technology - Hellas, HITS gGmbH, KITVerified email at ics.forth.gr
Andre J. AbererVerified email at aberer.io
Benjamin LinardINRAE ToulouseVerified email at inrae.fr
Fabio PardiResearch Fellow, CNRS, FranceVerified email at lirmm.fr
Ghada BadrAssociate ProfessorVerified email at uottawa.ca
Eric LyonsProfessor. BIO5 Institute, Genetics, Plant Sciences, Biosystems Engineering, College of AgVerified email at arizona.edu

Krister M. Swenson

CNRS, LIRMM, Université Montpellier

Verified email at lirmm.fr - Homepage

Computational Biology Comparative Genomics Rearrangements Consensus Methods Gene/Species Tree Reconciliation


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Approximating the true evolutionary distance between two genomes KM Swenson, M Marron, JV Earnest-DeYoung, BME Moret Journal of Experimental Algorithmics (JEA) 12, 1-17, 2008	103	2008
Genomic distances under deletions and insertions M Marron, KM Swenson, BME Moret Theoretical Computer Science 325 (3), 347-360, 2004	73	2004
An optimal reconciliation algorithm for gene trees with polytomies M Lafond, KM Swenson, N El-Mabrouk International Workshop on Algorithms in Bioinformatics, 106-122, 2012	52	2012
Uncovering hidden phylogenetic consensus in large data sets N Pattengale, A Aberer, K Swenson, A Stamatakis, B Moret IEEE/ACM transactions on computational biology and bioinformatics 8 (4), 902-911, 2011	51	2011
Rapid alignment-free phylogenetic identification of metagenomic sequences B Linard, KM Swenson, F Pardi Bioinformatics 35 (18), 3303-3312, 2019	49	2019
Sorting signed permutations by inversions in O (n log n) time KM Swenson, V Rajan, Y Lin, BME Moret Journal of Computational Biology 17 (3), 489-501, 2010	48	2010
Genomic distances under deletions and insertions M Marron, KM Swenson, BME Moret Computing and Combinatorics: 9th Annual International Conference, COCOON …, 2003	40	2003
OMG! Orthologs in multiple genomes–competing graph-theoretical formulations C Zheng, K Swenson, E Lyons, D Sankoff International Workshop on Algorithms in Bioinformatics, 364-375, 2011	38	2011
Ancestral Genome Organization: An Alignment Approach P Holloway, K Swenson, D Ardell, N El-Mabrouk Journal of Computational Biology 20 (4), 280-295, 2013	37*	2013
Gene trees and species trees: irreconcilable differences KM Swenson, N El-Mabrouk BMC bioinformatics 13 (19), S15, 2012	33	2012
Gene tree correction guided by orthology M Lafond, M Semeria, KM Swenson, E Tannier, N El-Mabrouk BMC bioinformatics 14 (15), 1-9, 2013	31	2013
Heuristics for the inversion median problem V Rajan, AW Xu, Y Lin, KM Swenson, BME Moret BMC bioinformatics 11 (1), S30, 2010	28	2010
Gene tree correction for reconciliation and species tree inference: complexity and algorithms R Dondi, N El-Mabrouk, KM Swenson Journal of Discrete Algorithms 25, 51-65, 2014	24	2014
Estimating true evolutionary distances under rearrangements, duplications, and losses Y Lin, V Rajan, KM Swenson, BME Moret BMC bioinformatics 11 (1), 1-11, 2010	24	2010
Hurdles hardly have to be heeded KM Swenson, Y Lin, V Rajan, BME Moret Comparative Genomics: International Workshop, RECOMB-CG 2008, Paris, France …, 2008	24	2008
Models and algorithms for genome rearrangement with positional constraints KM Swenson, P Simonaitis, M Blanchette Algorithms for Molecular Biology 11 (1), 13, 2016	23	2016
Gene tree correction for reconciliation and species tree inference KM Swenson, A Doroftei, N El-Mabrouk Algorithms for Molecular Biology 7, 1-11, 2012	23	2012
Uncovering hidden phylogenetic consensus ND Pattengale, KM Swenson, BME Moret International Symposium on Bioinformatics Research and Applications, 128-139, 2010	22	2010
Diversity of bacteriophages encoding Panton-Valentine leukocidin in temporally and geographically related Staphylococcus aureus GW Coombs, SL Baines, BP Howden, KM Swenson, FG O’Brien PloS one 15 (2), e0228676, 2020	21	2020
A framework for orthology assignment from gene rearrangement data KM Swenson, ND Pattengale, BME Moret RECOMB Workshop on Comparative Genomics, 153-166, 2005	20	2005

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