Thouis (Ray) Jones

Cited by

	All	Since 2018
Citations	15756	7281
h-index	29	22
i10-index	42	30

1500

750

375

1125

2001200220032004200520062007200820092010201120122013201420152016201720182019202020212022202340 47 115 166 174 256 262 310 388 480 524 678 800 809 995 1149 1158 1218 1313 1283 1395 1460 610

Public access

View all

23 articles

0 articles

available

not available

Based on funding mandates

Co-authors

Anne E. CarpenterInstitute Scientist and Imaging Platform Director, Broad Institute of Harvard and MITVerified email at broadinstitute.org
Polina GollandMassachusetts Institute of TechnologyVerified email at mit.edu
Hanspeter PfisterAn Wang Professor of Computer Science, Harvard UniversityVerified email at seas.harvard.edu
Jeff Lichtmanprofessor of molecular and cellular biology, Harvard UniversityVerified email at mcb.harvard.edu
David M. SabatiniWhitehead Institute/MIT/HHMIVerified email at wi.mit.edu
Ronald PerryMitsubishi Electric Research LaboratoriesVerified email at merl.com
Michael R. LamprechtHealth Tech Investor @ TenmileVerified email at columbia.edu
Seymour Knowles-BarleyVolpara HealthVerified email at volparahealth.com
Narayanan 'Bobby' KasthuriUniversity of Chicago/Argonne National LaboratoryVerified email at uchicago.edu
Jason MoffatSenior Scientist & Program Head, Genetics & Genome Biology, Sickkids Hospital; Professor, UofTVerified email at utoronto.ca
David GuertinUMass Medical SchoolVerified email at umassmed.edu
William T. FreemanProfessor of Computer Science, MITVerified email at mit.edu
Sarah Frisken (aka Gibson)Research Associate, Brigham and Women's HospitalVerified email at bwh.harvard.edu
Ola FrimanSICK LinköpingVerified email at sickivp.se
Sharon GrossmanGraduate Student, Broad Institute and MITVerified email at broadinstitute.org
Vebjorn LjosaComputational biologist, Broad Institute of MIT and HarvardVerified email at broad.mit.edu
Drew T BergmanGeisel School of Medicine at Dartmouth, Broad Institute of MIT and HarvardVerified email at broadinstitute.org
Jesse Engreitz, PhDStanford University; Broad Institute of MIT and HarvardVerified email at stanford.edu
Charles FulcoSanofiVerified email at sanofi.com
Mark-Anthony BrayNovartis Institutes for BioMedical ResearchVerified email at novartis.com

Thouis (Ray) Jones

Other namesThouis R. Jones, Ray Jones, Thouis Jones

Broad Institute

Verified email at broadinstitute.org - Homepage

Genomics Gene Regulation


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
CellProfiler: image analysis software for identifying and quantifying cell phenotypes AE Carpenter, TR Jones, MR Lamprecht, C Clarke, IH Kang, O Friman, ... Genome biology 7, 1-11, 2006	5120	2006
Example-based super-resolution WT Freeman, TR Jones, EC Pasztor IEEE Computer graphics and Applications 22 (2), 56-65, 2002	3439	2002
Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software L Kamentsky, TR Jones, A Fraser, MA Bray, DJ Logan, KL Madden, ... Bioinformatics 27 (8), 1179-1180, 2011	1081	2011
Saturated reconstruction of a volume of neocortex N Kasthuri, KJ Hayworth, DR Berger, RL Schalek, JA Conchello, ... Cell 162 (3), 648-661, 2015	925	2015
Adaptively sampled distance fields: A general representation of shape for computer graphics SF Frisken, RN Perry, AP Rockwood, TR Jones Proceedings of the 27th annual conference on Computer graphics and …, 2000	874	2000
Non-iterative, feature-preserving mesh smoothing TR Jones, F Durand, M Desbrun ACM SIGGRAPH 2003 Papers, 943-949, 2003	771	2003
CellProfiler Analyst: data exploration and analysis software for complex image-based screens TR Jones, IH Kang, DB Wheeler, RA Lindquist, A Papallo, DM Sabatini, ... BMC bioinformatics 9 (1), 1-16, 2008	585	2008
Activity-by-contact model of enhancer–promoter regulation from thousands of CRISPR perturbations CP Fulco, J Nasser, TR Jones, G Munson, DT Bergman, V Subramanian, ... Nature genetics 51 (12), 1664-1669, 2019	489	2019
Scoring diverse cellular morphologies in image-based screens with iterative feedback and machine learning TR Jones, AE Carpenter, MR Lamprecht, J Moffat, SJ Silver, JK Grenier, ... Proceedings of the National Academy of Sciences 106 (6), 1826-1831, 2009	428	2009
Genome-wide enhancer maps link risk variants to disease genes J Nasser, DT Bergman, CP Fulco, P Guckelberger, BR Doughty, ... Nature 593 (7858), 238-243, 2021	243	2021
Voronoi-based segmentation of cells on image manifolds TR Jones, A Carpenter, P Golland Computer Vision for Biomedical Image Applications: First International …, 2005	219	2005
Comparison of methods for image-based profiling of cellular morphological responses to small-molecule treatment V Ljosa, PD Caie, R Ter Horst, KL Sokolnicki, EL Jenkins, S Daya, ... Journal of biomolecular screening 18 (10), 1321-1329, 2013	162	2013
Large-scale automatic reconstruction of neuronal processes from electron microscopy images V Kaynig, A Vazquez-Reina, S Knowles-Barley, M Roberts, TR Jones, ... Medical image analysis 22 (1), 77-88, 2015	146	2015
Pipeline for illumination correction of images for high‐throughput microscopy S Singh, MA Bray, TR Jones, AE Carpenter Journal of microscopy 256 (3), 231-236, 2014	104	2014
Efficient generation of Poisson-disk sampling patterns TR Jones Journal of Graphics Tools 11 (2), 27-36, 2006	89	2006
Normal improvement for point rendering TR Jones, F Durand, M Zwicker IEEE Computer Graphics and Applications 24 (4), 53-56, 2004	86	2004
A siRNA screen identifies RAD21 , EIF3H , CHRAC1 and TANC2 as driver genes within the 8q23, 8q24 … SF Mahmood, N Gruel, E Chapeaublanc, A Lescure, T Jones, F Reyal, ... Carcinogenesis 35 (3), 670-682, 2014	81	2014
Detail-directed hierarchical distance fields SF Frisken, RN Perry, TR Jones US Patent 6,396,492, 2002	71	2002
Small molecules discovered in a pathway screen target the Rho pathway in cytokinesis AB Castoreno, Y Smurnyy, AD Torres, MS Vokes, TR Jones, ... Nature chemical biology 6 (6), 457-463, 2010	64	2010
One-pass super-resolution images WT Freeman, TR Jones US Patent 6,766,067, 2004	61	2004

The system can't perform the operation now. Try again later.

Articles 1–20

Citations per year

Duplicate citations

Merged citations

Add co-authorsCo-authors

Follow

Cited by

Co-authors